Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e04
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0156 + 5070962-5072351,5072466-5073139                           30   1.6  
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679...    30   1.6  
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298...    29   2.8  
03_04_0065 + 16984736-16984835,16984932-16985369,16985511-169856...    28   6.5  
05_01_0484 - 4033169-4033867,4033988-4034051,4035720-4035839,403...    27   8.7  
02_01_0550 + 4044683-4044784,4044862-4044975,4045277-4045360,404...    27   8.7  

>09_02_0156 + 5070962-5072351,5072466-5073139
          Length = 687

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -2

Query: 130 LYALGYCRRAGFSLGIYYKNQLIQKVNI---IMQENVL 26
           ++ LGYCRR G + G+ Y ++  +KV I   I   NVL
Sbjct: 454 VHLLGYCRRKGITSGLVYLHEEWEKVVIHRDIKASNVL 491


>03_02_0249 -
           6792210-6792215,6794332-6794607,6794692-6795180,
           6795832-6795900,6797316-6797403,6798193-6798224,
           6799277-6799308,6799412-6799646
          Length = 408

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -2

Query: 325 NLHFCHLHRFQIPHL--RVSFSS 263
           NLH+CHLH FQ+  L  +VS SS
Sbjct: 119 NLHWCHLHPFQMSTLSNKVSLSS 141


>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
            31029955-31030017,31031597-31031704,31031772-31031836,
            31031928-31032015,31032104-31032157,31032234-31032380,
            31033358-31033429,31034077-31034226,31034317-31034430,
            31034762-31034875,31035925-31036077,31037437-31037529,
            31038202-31038318,31038984-31039086,31039192-31039376,
            31039448-31039522,31040451-31040534,31041547-31041588,
            31041668-31041847,31042109-31042162,31042239-31042280,
            31042869-31042967,31043040-31043174,31043325-31043427,
            31045061-31045134,31045227-31045270,31045393-31045471,
            31045592-31045705,31045842-31045946,31046027-31046161,
            31046447-31046546,31046870-31046883,31046936-31047004,
            31047079-31047182,31047299-31047347,31047931-31048023,
            31048102-31048210,31048619-31048755,31048851-31048928,
            31049015-31049104,31049402-31049467,31049546-31049638,
            31049711-31049839,31050024-31050122,31051366-31051512,
            31051605-31051910
          Length = 2050

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 244  LDPRKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESALTFEKDFNSLKKTYE 423
            L   KQ + K+LED++       +N+N    I      I  +E  L  E+D N  +K + 
Sbjct: 1463 LTKEKQSLSKQLEDLKSSQKTTTENSNE-QAIKEKDFRIQTLEKVLEKERDDNKKEKAFR 1521

Query: 424  K 426
            +
Sbjct: 1522 R 1522


>03_04_0065 +
           16984736-16984835,16984932-16985369,16985511-16985635,
           16985747-16985881,16985954-16986012,16986082-16986843,
           16986973-16987118,16987151-16987251
          Length = 621

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
 Frame = +1

Query: 184 CIVFQKPDVDIAIQQDMNLSLDPRKQLMRKKLEDVE------FESDADDKN 318
           C+   +P++D+    D   + D RK++M +++ D+       FE DADD++
Sbjct: 497 CVKLSRPELDLREVLDQGAASDARKEVM-EEIGDLGESVLPLFEEDADDED 546


>05_01_0484 -
           4033169-4033867,4033988-4034051,4035720-4035839,
           4036631-4036827,4037000-4037170,4037292-4037432,
           4037519-4037602,4037852-4037989,4038111-4038136,
           4038292-4038346,4039094-4039198,4039303-4039371,
           4040038-4040112
          Length = 647

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 190 VFQKPDVDIAIQQDMNLSLDPRKQLMRKKLE-DVEFESDADDKNANSLNVI 339
           +FQ+      +     +   P K + R+++  DVE ES ADD +ANS+  I
Sbjct: 368 IFQRSPPSRLVFLQWEICSGPAKSISRRRIRRDVEIESVADD-SANSVQNI 417


>02_01_0550 +
           4044683-4044784,4044862-4044975,4045277-4045360,
           4045818-4045917,4046923-4046971,4047071-4047158,
           4047251-4047361,4047771-4047833,4047942-4048052,
           4048517-4048582,4048689-4048766,4049553-4049630,
           4049784-4049850,4049930-4050015,4050301-4050333,
           4050426-4050458,4050754-4050854,4050986-4051071,
           4051478-4051584,4051683-4051839,4051854-4051984
          Length = 614

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = +1

Query: 94  KSLRAGSILVHINCFKLSNLELMAEKENSVCIVFQKPDVDIAIQ 225
           K L AGS     N  K  +LEL     N+ CIVF   D+D+AI+
Sbjct: 310 KKLMAGSA----NTVKKVSLELGG---NAPCIVFDDADIDVAIK 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,606,603
Number of Sequences: 37544
Number of extensions: 188934
Number of successful extensions: 397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)