Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e04
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31704| Best HMM Match : MFS_1 (HMM E-Value=0.024)                   28   5.1  
SB_47501| Best HMM Match : Y_phosphatase (HMM E-Value=9e-12)           28   6.7  
SB_42264| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_50995| Best HMM Match : Foamy_BEL (HMM E-Value=2.4)                 27   8.8  
SB_21717| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.64)             27   8.8  
SB_11825| Best HMM Match : Pkinase (HMM E-Value=1.2e-17)               27   8.8  
SB_3762| Best HMM Match : MTS (HMM E-Value=0.11)                       27   8.8  
SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)                 27   8.8  

>SB_31704| Best HMM Match : MFS_1 (HMM E-Value=0.024)
          Length = 625

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 182 TEFSFSAINSRLLSLKQFICTRILPARRLFAGNLLQKSTDSKSKYYHARKCAN 24
           T  + +A+ +RLL   +  C R L     FAG L+           + RKC +
Sbjct: 67  TSAAITALGTRLLDPSRASCLRALVQSMFFAGMLVGSFVSGPVSDIYGRKCCS 119


>SB_47501| Best HMM Match : Y_phosphatase (HMM E-Value=9e-12)
          Length = 274

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 566 T*YKNQFY*LNKINCLLKKSCFVVDSNEDN 477
           T + ++F  LNK++ +L K+C++V S  +N
Sbjct: 89  TRFDSEFKTLNKVSPILPKACYIVASYPEN 118


>SB_42264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 220 IQQDMNLSLDPRK--QLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESALTFEK 393
           + ++  LS  P K  +  RK   D+EF+S+ + +++   N+     +FI  IE  + F  
Sbjct: 253 VTKNRPLSFPPSKKEETTRKNYRDLEFDSEGNFESSLDKNIAFTENRFI-PIEIDVGFPS 311

Query: 394 DFNSLKKTY 420
           + N +   Y
Sbjct: 312 EANDVVPKY 320


>SB_50995| Best HMM Match : Foamy_BEL (HMM E-Value=2.4)
          Length = 354

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 268 RKKLEDVEFESDADDKNANSLNVINNTTKFINGIESALTFEKD 396
           R+ + +  +ESD DD + N ++ +++TT   +  ES+  F +D
Sbjct: 109 RRNINNNNYESDDDDSDTNMVSDLDDTTN--DDDESSEEFNRD 149


>SB_21717| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.64)
          Length = 499

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +1

Query: 220 IQQDMNLSLDPRKQLMRKKLEDVEFESDADDKNANSLNVINNTTKFINGIESALTFEKDF 399
           ++  + +   P K +  KKL D++ +         S     N  +FIN  +      KD 
Sbjct: 426 VRYTLAIKTAPSKAIAEKKLLDMDLDPLYQALVVVSEEQARNIKQFINEAKEGRKTHKDI 485

Query: 400 NSLKKTYEKIMK 435
                 YEK+M+
Sbjct: 486 EQEALKYEKLME 497


>SB_11825| Best HMM Match : Pkinase (HMM E-Value=1.2e-17)
          Length = 181

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 82  YYKNQLIQKVNIIMQENVLTLTL-PQNI 2
           YY +QL+Q +  + ++NVL L L P+NI
Sbjct: 100 YYMHQLLQGIEHVHKKNVLHLDLKPENI 127


>SB_3762| Best HMM Match : MTS (HMM E-Value=0.11)
          Length = 286

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
 Frame = +1

Query: 199 KPDVDIAIQQDMNLSLDPRKQ--------LMRKKLEDVEFESDADDKNANSLNVINNTTK 354
           +P    A+ +D NL LD R +         +   L+DVE +  ++DK+    + I  +T 
Sbjct: 26  QPGKQFAVPKDFNLPLDIRTEKQNIGGFSFVHLNLQDVEMKLKSNDKSMEIASAIRTSTD 85

Query: 355 FINGI 369
            I  +
Sbjct: 86  LIPSV 90


>SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = +1

Query: 94  KSLRAGSILVHINCFKLSNLE-LMAEKENSVCIVFQKP--DVDIAIQQDMNLSLDPRKQL 264
           KSL+  S  + I    +  LE  +AEK N +  + ++   + ++ +++   L  +  K  
Sbjct: 255 KSLKTASEDIEILRRDIKVLEDAIAEKVNEITDMSERHNREKELILKEQQQLQDEMHKMR 314

Query: 265 MRKKLEDVEFESDADDKNANSLNVINN 345
            + K    + E+  +DK  N  +V+NN
Sbjct: 315 QKSKASIHDIENILNDKEKNLTDVMNN 341


>SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
          Length = 539

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 268 RKKLEDVEFESDADDKNANSLNVINNTTKFINGIESALTFEKD 396
           R+ + +  +ESD DD + N ++ +++TT   +  ES+  F +D
Sbjct: 322 RRNINNNNYESDDDDSDTNMVSDLDDTTN--DDDESSEEFNRD 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,284,341
Number of Sequences: 59808
Number of extensions: 245031
Number of successful extensions: 694
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)