Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e02
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1296| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.75 
SB_58243| Best HMM Match : DUF584 (HMM E-Value=1.5)                    30   1.7  
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)                   30   1.7  
SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018)                 29   5.3  
SB_25488| Best HMM Match : Death (HMM E-Value=1.4e-12)                 28   7.0  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_12199| Best HMM Match : FF (HMM E-Value=4.6)                        28   7.0  
SB_17627| Best HMM Match : F_actin_cap_B (HMM E-Value=0)               28   9.2  

>SB_1296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 954

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +2

Query: 197 LLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVENL 316
           LL A +  N  TA H++L  A   A +LN+Y D N  ENL
Sbjct: 445 LLGAWEQANVLTADHKRLQAA---AEQLNSYRDSNLDENL 481


>SB_58243| Best HMM Match : DUF584 (HMM E-Value=1.5)
          Length = 1308

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +2

Query: 248  LHEAMQMASELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESE 427
            L E +  A+ELNNY + N   NL    + K+    A+ V ++H           P +   
Sbjct: 1009 LCETIAEAAELNNYRNSNSAPNLITEKVMKESAQLAKRVSKNHL-------DVRPTVSRT 1061

Query: 428  AIQKAAQMQPTVDKM 472
                +A + P+V++M
Sbjct: 1062 KSTPSALLMPSVERM 1076


>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
          Length = 736

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +2

Query: 197 LLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVENL 316
           LL A +  N  TA H++L  A   A +LN+Y D N  ENL
Sbjct: 598 LLGAWEQANVLTADHKRLLAA---AEQLNSYRDSNLDENL 634


>SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018)
          Length = 541

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 25/103 (24%), Positives = 39/103 (37%)
 Frame = +2

Query: 113 RIEQLEAKLGLSPEISIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAMQMASELNNYS 292
           RI   EA   +S  +       D   A  L   Q+        E L   ++   EL    
Sbjct: 179 RIAYTEAHRSVSKHVPPSNLTYDPTAATTLMRIQSFEEKQQQKELL---LRQHRELQQQL 235

Query: 293 DPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLE 421
           +   +EN    D + +E +  EPV+R+         Q+ PV+E
Sbjct: 236 EREELENANIKDGNNEEAVMEEPVLRNPELSADSGIQSEPVIE 278


>SB_25488| Best HMM Match : Death (HMM E-Value=1.4e-12)
          Length = 387

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/71 (23%), Positives = 26/71 (36%)
 Frame = +2

Query: 182 SVTANLLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVENLQKNDLHKQEVLAAEP 361
           S T   ++     NN         E   MA         + V+N+Q ND   Q     E 
Sbjct: 208 SSTPRPVTVENNTNNPQVQFIPTTEENNMADRAPEVKATDSVKNIQNNDFTAQNGEPGEK 267

Query: 362 VIRHHCRCMQQ 394
           +++H CR   +
Sbjct: 268 MVKHMCRAAHE 278


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = -2

Query: 529 LNSMRYCISFRLYFC-SCSVHLVYSG-LH--LS-SFLYGLRLQNWCCLFTLLH 386
           L S+RYC+S  +++C S +VH   S  +H  LS +  Y L +   CC+   +H
Sbjct: 559 LLSVRYCLSVTVHYCLSATVHYCLSATVHYCLSVTVHYCLSVTVHCCMSVTVH 611



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 532 LLNSMRYCISFRLYFC-SCSVHLVYSGLHLSSFLYGLRLQNWCCLFTLLH 386
           LL S+RYC+S  ++ C S +VH   S     +  Y L +   CCL   +H
Sbjct: 334 LLLSVRYCLSVTVHCCLSVTVHYCLS----VTVHYCLSVTVHCCLSVTVH 379


>SB_12199| Best HMM Match : FF (HMM E-Value=4.6)
          Length = 193

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 212 QAINNATAGHEKLHEAMQMASELNNYSDPNFVENLQKN 325
           Q++ N    + K  E  +  SE    SD NF+E L+KN
Sbjct: 64  QSLKNLFTLYGKAKETSKQLSEYKMGSDSNFLERLRKN 101


>SB_17627| Best HMM Match : F_actin_cap_B (HMM E-Value=0)
          Length = 480

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 551 SAANDSSQQLANVAQMVEKVETKM 622
           S  +D+S  +AN+ +MVE +E KM
Sbjct: 155 SPVSDASPHIANIGKMVEDMENKM 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,114,237
Number of Sequences: 59808
Number of extensions: 343506
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)