Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3e02
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024765-1|AAF60529.2|  300|Caenorhabditis elegans Prion-like-(q...    30   2.0  
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U00047-1|AAA50687.2|  145|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like ...    28   8.1  
AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine r...    28   8.1  
AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to SU...    28   8.1  

>AC024765-1|AAF60529.2|  300|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 82
           protein.
          Length = 300

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +2

Query: 284 NYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESEAIQKAAQMQPTV 463
           ++SD + VENL+      Q++ A +P      R     ++  P    EA+++  Q QPT 
Sbjct: 215 HWSDVDNVENLENQATAAQQIPAKKP------RWNSVEQEPEPEAPLEAVEQQQQKQPTT 268

Query: 464 DKMH 475
           D  H
Sbjct: 269 DGQH 272


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 182 SVTANLLSAAQAINNATAGHEKLHEAMQMASE-LNNYSDPNFVENLQKNDLHKQEVLAAE 358
           ++ ANL    + +N      +K+ +   M SE + NYS PNF+ NLQ   L + ++ A  
Sbjct: 510 ALNANLTVFDKILNFWEVLDKKIQDKTVMHSEKVENYS-PNFIRNLQL--LSQLQLSADV 566

Query: 359 PVIRHHCRCMQQCKQATPVLE 421
              R    C+  C +  P ++
Sbjct: 567 KRTRALSTCLFACVEQIPYIK 587


>U00047-1|AAA50687.2|  145|Caenorhabditis elegans Hypothetical
           protein ZK418.3 protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 490 FCSCSVHLVYSGLHLSSFLYGLRLQNWCCLFTLLHTATVM 371
           F +C VHL   G+ L    YG   +N   LF  L T  ++
Sbjct: 26  FSACLVHLGSEGVRLGLGFYGNLAENMSALFGFLITTIII 65


>U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like
           protease protein 1 protein.
          Length = 697

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 272 SELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESEAIQ 436
           S L+NY+  N  +  ++N   K EVL   PV RH  +     ++   +++ + I+
Sbjct: 237 SSLSNYTSNNVRDYWRRNSAKKPEVLRRVPV-RHQFKHSTSVRKMNTIIDLKKIK 290


>AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine
           receptor, class z protein79 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 556 GRSASFG*LLNSMRYCISFRLYFCSCSVHLVYSGLHLSSFL 434
           GR   FG  +  +  CI F LY C+ + H +   L    FL
Sbjct: 92  GRRFFFGFFVIVVAMCIVFTLYLCTAAFHFITFLLAAQRFL 132


>AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to
           SUMO-1-specific protease protein.
          Length = 697

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 272 SELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESEAIQ 436
           S L+NY+  N  +  ++N   K EVL   PV RH  +     ++   +++ + I+
Sbjct: 237 SSLSNYTSNNVRDYWRRNSAKKPEVLRRVPV-RHQFKHSTSVRKMNTIIDLKKIK 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,256,927
Number of Sequences: 27780
Number of extensions: 283630
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)