Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d22
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    28   1.5  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.5  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   8.1  

>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 62  INNLQDNIFNLRI*ELCDGEVREYTKKINSVCGLWFILYL 181
           + NL+DN ++  +   CD  V EY   IN VC   ++  L
Sbjct: 632 LRNLEDNHWDEEVQAYCDSSVDEYDDPIN-VCHKGYVTLL 670


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 199 C*IFYCQIQNEPQATDTVNFFCIFSYFTIA*FLN 98
           C  F+  I   P  ++ V FFC F YF++  F +
Sbjct: 88  CRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFS 121


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 459 EMPTDIRCLFIQIEPKTFDDTFACV 533
           + P    C F QI P TFD  FA V
Sbjct: 213 KFPDAHSCFFEQIAPATFDHPFANV 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,596
Number of Sequences: 5004
Number of extensions: 61190
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)