Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d22
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738...    31   0.91 
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736...    31   0.91 
12_01_1112 - 11866376-11866447,11866528-11866662,11866772-118669...    29   3.7  
02_02_0440 - 10273032-10273259,10273423-10273461,10273875-102741...    29   3.7  
11_06_0119 + 20321687-20323624                                         29   4.8  
06_03_0522 - 21726317-21726634,21727202-21727654,21727771-217280...    28   8.5  
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340...    28   8.5  

>01_01_0937 -
           7388230-7388283,7388957-7389091,7389201-7389365,
           7389436-7389516,7389692-7389767,7389855-7389988,
           7390082-7390174,7390885-7391018,7391125-7391533,
           7392381-7392593
          Length = 497

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 433 PPNSVSAFCVFVKKKIQQVTKF*WNQL*VNFTVY 332
           PP+ V+A  +F+ K I Q TK  WN    ++T Y
Sbjct: 412 PPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQY 445


>01_01_0933 -
           7368672-7368785,7368860-7368895,7369581-7369715,
           7369825-7369989,7370060-7370140,7370316-7370391,
           7370479-7370612,7370706-7370798,7371860-7372188,
           7372290-7372350,7372407-7372778
          Length = 531

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 433 PPNSVSAFCVFVKKKIQQVTKF*WNQL*VNFTVY 332
           PP+ V+A  +F+ K I Q TK  WN    ++T Y
Sbjct: 414 PPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQY 447


>12_01_1112 -
           11866376-11866447,11866528-11866662,11866772-11866921,
           11867263-11867338,11867426-11867559,11867655-11867747,
           11868456-11868589,11868696-11868744,11869271-11869441,
           11870291-11870452
          Length = 391

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 433 PPNSVSAFCVFVKKKIQQVTKF*WNQL*VNFTVY 332
           PP+ V+A  +F+ K I Q  K  WN    ++T Y
Sbjct: 300 PPSLVAASAIFLAKFILQPAKHPWNSTLAHYTQY 333


>02_02_0440 -
           10273032-10273259,10273423-10273461,10273875-10274123,
           10274203-10274329,10275009-10275251,10275359-10275457,
           10275566-10275681,10275813-10276039,10276164-10276276,
           10276402-10276522,10276641-10276855,10277042-10277225,
           10277739-10278048,10278155-10278249,10278473-10278485
          Length = 792

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 62  INNLQDNIFNLRI*ELCDGEVREYTKKINSVCGLWFI 172
           ++N +  +   +I E+C G + E    IN+  G WFI
Sbjct: 650 VHNKETCLLIAQIVEICAGRIEEAASMINNTEGSWFI 686


>11_06_0119 + 20321687-20323624
          Length = 645

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 318 HIRKL*TVKLTYN*FHQNLVTCWIFFLTNTQNAD 419
           ++ +L  + L+YN F+Q L +CW + LT+    D
Sbjct: 237 NLTRLEKLDLSYNNFNQPLASCWFWNLTSLTYLD 270


>06_03_0522 -
           21726317-21726634,21727202-21727654,21727771-21728025,
           21728109-21728249,21728404-21728565,21728660-21728820,
           21731598-21731733
          Length = 541

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 600 QLFGFLMPVGVEMQYKRYGCYQKRKQ 523
           +L G+ +P G EM    YGC   RK+
Sbjct: 425 KLAGYDVPAGTEMVINLYGCNMNRKE 450


>03_01_0438 +
           3399203-3399297,3399389-3399480,3399638-3399750,
           3400345-3400610,3400793-3400864,3401023-3401098,
           3401241-3401339,3401432-3401586,3401679-3401783,
           3401880-3401966,3402459-3402543,3402626-3402734,
           3403468-3403544,3403635-3403715,3404137-3404328,
           3404415-3404528,3404650-3404742,3404864-3404990,
           3405075-3405151,3405455-3405502,3405588-3405657,
           3405737-3405810,3405895-3406005,3406222-3406300,
           3406936-3408320
          Length = 1293

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = +3

Query: 75  KTTFSIYEFKNYAMVKYENIQKKLTVSVACGSF 173
           +  F+++ F+    +KY ++++++  +V CG F
Sbjct: 452 ENVFNLFSFREVVGMKYVDVRRRIPDAVVCGIF 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,355,087
Number of Sequences: 37544
Number of extensions: 326167
Number of successful extensions: 549
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)