Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d21
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82053-3|CAB04837.2|  240|Caenorhabditis elegans Hypothetical pr...    38   0.005
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    34   0.085
AF016676-8|AAG24105.1|  502|Caenorhabditis elegans Hypothetical ...    32   0.45 
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...    30   1.4  
Z78198-5|CAB01571.1|  437|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF125956-9|AAK68289.1|  318|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF125956-8|AAD14728.2|  678|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF125956-7|AAX55694.1|  657|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z68748-11|CAL63997.1|  193|Caenorhabditis elegans Hypothetical p...    28   7.4  
U40941-1|AAA81707.3|  306|Caenorhabditis elegans Syntaxin protei...    28   7.4  

>Z82053-3|CAB04837.2|  240|Caenorhabditis elegans Hypothetical
           protein T26E3.4 protein.
          Length = 240

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
 Frame = +1

Query: 289 EQQAEEIEVLKSIYEGDD---------NFK-QVDAKTYQYK-YMDGDKSFILEISWGLKY 435
           EQQ +EIE L++IY  ++         N +  +  K+ QY+   D D    L I +   Y
Sbjct: 5   EQQEQEIEALEAIYSEEEIHVASRDYPNIELSIQLKSNQYEDPTDDDFDVELGIEFTENY 64

Query: 436 PTEKPSFNLEIFYNQHLLATVKENILSILNTEAEQWLGCAMTYTLFECLRERVSEIL 606
           P E P   L    +      + E+I   L + AE+ LG  M + +   L++ + E++
Sbjct: 65  PDEIPIITLNGIEDAFTAERIAESI-DKLRSVAEENLGMVMVFAIVSALQDEIGELV 120


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
           protein Y81G3A.3 protein.
          Length = 1696

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = +1

Query: 400 SFILEISWGLKYPTEKPSFNLEIFYNQHLLATVKENILSILNTEAEQWLGCAMTYTLFEC 579
           S IL +     YP  KP+  +++   Q L     +N+L+IL   A+ W GC +   L   
Sbjct: 73  SVILHVKCSEDYPQRKPA--VDLLDPQGLSKEDVQNLLTILRQMADTWEGCVVIAELAHR 130

Query: 580 LRERVSE 600
           +RE +++
Sbjct: 131 VREFLTD 137


>AF016676-8|AAG24105.1|  502|Caenorhabditis elegans Hypothetical
           protein F41B5.9 protein.
          Length = 502

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 32/130 (24%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
 Frame = +1

Query: 304 EIEVLKSIYEGDDNFKQVDAKTYQYK----------YMDGDKSFI------LEISWGLKY 435
           ++EV+KSI++    F+++ A+T +++          +M GD++ +      +++SW   Y
Sbjct: 245 QLEVIKSIWQTYGRFEKL-ARTAEFRRKKLFKNNNVFMVGDEACLDTENVEVDVSWFSDY 303

Query: 436 PTEKPSFNLEIFYNQHLLATVKE-NILSILNTEAEQWLGCAMTYTLFECLRERVSEILAG 612
             E+ S+ ++ F+N+  L  VKE   L+   TE    L     +   + L+  V+  +  
Sbjct: 304 TYEQVSYFMDCFHNEIFLQIVKEFEALNPTTTELNFMLLQVCLHHAGKKLQGDVA-TMTD 362

Query: 613 QVEEVVSTRV 642
            +EEV+S ++
Sbjct: 363 YLEEVISNQL 372


>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
           family protein 4,isoform a protein.
          Length = 1080

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +1

Query: 289 EQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEI 417
           ++QAE  ++L S+ E  D++ +VDA   QY  ++  K F L+I
Sbjct: 40  KEQAEANQILMSLKEERDSWTKVDA-ILQYSQLNESKYFALQI 81


>Z78198-5|CAB01571.1|  437|Caenorhabditis elegans Hypothetical
           protein F55C5.6 protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/70 (25%), Positives = 37/70 (52%)
 Frame = +1

Query: 286 AEQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLE 465
           A Q+ EE+ ++ +I+EG D   ++  + Y + Y +G       + +G +Y   + +   E
Sbjct: 36  AAQRFEELGIVYTIFEGSD---RIGGRVYSFPYQNG------YLQFGAEYINGEDNDIYE 86

Query: 466 IFYNQHLLAT 495
           I   ++LL+T
Sbjct: 87  IVERKNLLST 96


>AF125956-9|AAK68289.1|  318|Caenorhabditis elegans Hypothetical
           protein DC2.7b protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +1

Query: 313 VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEIFYNQHLLA 492
           +LK   +G D FK+++ +  QY   +  + F  ++  GLK+  E    + +I     LL 
Sbjct: 100 LLKEYADGGDLFKKLETEGEQYS--ENAQCFFKQLISGLKFIHEHEIVHRDIKLENLLLM 157

Query: 493 TVKENIL 513
             K N++
Sbjct: 158 KSKSNLV 164


>AF125956-8|AAD14728.2|  678|Caenorhabditis elegans Hypothetical
           protein DC2.7a protein.
          Length = 678

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +1

Query: 313 VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEIFYNQHLLA 492
           +LK   +G D FK+++ +  QY   +  + F  ++  GLK+  E    + +I     LL 
Sbjct: 100 LLKEYADGGDLFKKLETEGEQYS--ENAQCFFKQLISGLKFIHEHEIVHRDIKLENLLLM 157

Query: 493 TVKENIL 513
             K N++
Sbjct: 158 KSKSNLV 164


>AF125956-7|AAX55694.1|  657|Caenorhabditis elegans Hypothetical
           protein DC2.7c protein.
          Length = 657

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +1

Query: 313 VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEIFYNQHLLA 492
           +LK   +G D FK+++ +  QY   +  + F  ++  GLK+  E    + +I     LL 
Sbjct: 100 LLKEYADGGDLFKKLETEGEQYS--ENAQCFFKQLISGLKFIHEHEIVHRDIKLENLLLM 157

Query: 493 TVKENIL 513
             K N++
Sbjct: 158 KSKSNLV 164


>Z68748-11|CAL63997.1|  193|Caenorhabditis elegans Hypothetical
           protein F13H10.9 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +1

Query: 280 DEAEQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFN 459
           DE   + + ++ +  I   +D+ ++ D+KT  +  +DG +  I  +   L  P    S N
Sbjct: 131 DEEAAKNKRLDTISEIAMSNDSLQRNDSKTNVFNNIDGSRKTISPMEVDLN-PGLSSSIN 189

Query: 460 LE 465
           LE
Sbjct: 190 LE 191


>U40941-1|AAA81707.3|  306|Caenorhabditis elegans Syntaxin protein 1
           protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 516 NIEHRSGTMARLRHDVHAV*VPQGKGV 596
           N+E + G +A++ HD+H + V QG+ V
Sbjct: 216 NLERQMGELAQMFHDLHIMVVSQGEMV 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,448,444
Number of Sequences: 27780
Number of extensions: 284531
Number of successful extensions: 666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)