Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3d17
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 149 3e-37
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 108 9e-25
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 30 0.39
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 27 3.6
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 4.8
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 26 6.3
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 8.3
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 25 8.3
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 149 bits (362), Expect = 3e-37
Identities = 68/116 (58%), Positives = 94/116 (81%)
Frame = +2
Query: 305 SDIKPINENTVHKICSGQVVLNLAVAVKELVENSLDAGATKIDIRCKNYGMDSIEVSDNG 484
S +KPI+ NTVHKICSGQV+ ++A AVKELVENSLD+GAT I+IR KNYG++SIEV DNG
Sbjct: 2 STVKPIDANTVHKICSGQVITDVASAVKELVENSLDSGATTIEIRFKNYGINSIEVVDNG 61
Query: 485 SGVNEDNFAALTLKYHTSKLSDYSDLLGVSSFGFRGEALSSLCALANLTVTTRHKN 652
SG++ ++ ++ K+ TSK++D+ DL + +FGFRGEALSSLCA+ + ++T +N
Sbjct: 62 SGIDAGDYESIGKKHFTSKITDFEDLEALQTFGFRGEALSSLCAVGQVIISTATQN 117
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 108 bits (259), Expect = 9e-25
Identities = 46/111 (41%), Positives = 81/111 (72%)
Frame = +2
Query: 311 IKPINENTVHKICSGQVVLNLAVAVKELVENSLDAGATKIDIRCKNYGMDSIEVSDNGSG 490
I+P+++ ++KI +G+++ A+KEL+ENSLDAG+T ID+ K+ G+ ++++DNGSG
Sbjct: 9 IRPLDQLVINKIAAGEIIERPENAIKELIENSLDAGSTSIDVLLKDGGLKLLQITDNGSG 68
Query: 491 VNEDNFAALTLKYHTSKLSDYSDLLGVSSFGFRGEALSSLCALANLTVTTR 643
+ D+ L ++ TSK+ +++DL + +FGFRGEAL+S+ +A +TV T+
Sbjct: 69 IQYDDLPYLCQRFSTSKIDNFNDLQHLQTFGFRGEALASISHVAKVTVVTK 119
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 29.9 bits (64), Expect = 0.39
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Frame = +2
Query: 326 ENTVHKICSGQVVLNLAVAVKELVENSLDAGA-TKIDIRCKNYGMDSIEVSDN--GSGVN 496
EN + Q L + + + V ++ D+GA T I + K ++S +D G
Sbjct: 90 ENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLPIKEPPLESNARNDKLKGHATF 149
Query: 497 EDNFAALTLKYHTSKLSDYSDLLGVSSFGFRGEALSSLCALANLTV 634
+ A T +TSK + D++G FG + S L A L++
Sbjct: 150 AEMVKAFTKIENTSKRLEIIDIMGTYFFGILRDHPSDLLACVYLSI 195
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/88 (23%), Positives = 35/88 (39%)
Frame = +2
Query: 383 VKELVENSLDAGATKIDIRCKNYGMDSIEVSDNGSGVNEDNFAALTLKYHTSKLSDYSDL 562
++E +N LDA ID K + + VN++ + T ++ +L
Sbjct: 356 IEEHEKNILDAAVKSIDCLTKEGTEKLFALMEEIKSVNDNRYITETSNKVMENFTEIKNL 415
Query: 563 LGVSSFGFRGEALSSLCALANLTVTTRH 646
G+ R EA S C + + T RH
Sbjct: 416 GGLEF--LRSEASSLDCLIDKVNGTYRH 441
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 183 YFY*FNYVLKSIQRYKPAKSRIKDYIEICMS 91
Y+ + +VL+S+QR + +KDY+ C S
Sbjct: 301 YWEAYKHVLRSLQRLSASTFPMKDYLVHCKS 331
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 458 DSIEVSDNGSGVNEDNFAALTLK-YHTSKL 544
D +E GS ++D F ++TLK YH KL
Sbjct: 145 DEVEKDVQGSLKSKDGFRSVTLKDYHRQKL 174
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 8.3
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Frame = -3
Query: 410 PVNFPLIP*LLQPSSKLPVPNKFYEQYFHLWVLYHLKVYLNCP-SY-----KCFKKLLIY 249
P+NF + L+ P+ + F+ F L + L VYL+ SY KC++ Y
Sbjct: 58 PLNFDISVHLM-PTVYTLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWVEKCYQMNKFY 116
Query: 248 DYDYLHERNLVFVTMDYYGVSIISINLTMYLKV 150
Y L + + T+ Y SIIS + + LK+
Sbjct: 117 AYPILAILDPIKKTIFYTVASIISFSCYIVLKM 149
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = -1
Query: 484 TIV*NFNAIHTIILASNINFGSSCIQ*IFH*FLNCYSQVQNYLSRTNFMNSIFIYG-FYI 308
T+ F+ + + + +I+ + +FH FL+C Q+ + N F+ Y
Sbjct: 416 TLQYTFSTVRSALSGFSIDHSEKMMSPVFHQFLDCVWQIMDQFPNCFEFNERFLRRLLYH 475
Query: 307 T*RCT*IVHLTNVLRNCLYTTMTIYMRGIW 218
C L N R +++ + R IW
Sbjct: 476 LYSCQYGSFLYNSERERAQASVSTHTRCIW 505
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,663
Number of Sequences: 5004
Number of extensions: 60957
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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