Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3d17
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 140 1e-33
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 107 1e-23
09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680... 60 2e-09
10_06_0036 - 9914606-9915561,9916287-9916368 32 0.40
02_01_0430 - 3136181-3136248,3136544-3136923,3137545-3137963 30 2.2
04_04_1587 + 34630678-34632282 29 2.8
03_01_0441 + 3418622-3420988 28 8.7
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 140 bits (339), Expect = 1e-33
Identities = 78/155 (50%), Positives = 100/155 (64%), Gaps = 24/155 (15%)
Frame = +2
Query: 293 GTPSSDIKPINENTVHKICSGQVVLNLAVAVKELVENSLDAGATKIDIRCKNYGMDSIEV 472
G S I+PI ++ VH+ICSGQV+ +L+ AVKELVENSLDAGAT +++ ++YG DS V
Sbjct: 3 GGSSPAIRPIGKSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVTLRSYGEDSFTV 62
Query: 473 SDNGSGVNEDNFA-----------------------ALTLKYHTSKLSDYSDLLGVSSFG 583
+DNG+G++ NF AL LK+HTSK+SD+ DL V++FG
Sbjct: 63 ADNGTGISPTNFQARIPPLLLSHLLLRSRDLVADRHALALKHHTSKISDFGDLASVATFG 122
Query: 584 FRGEALSSLCALANLTVTTRHKNSNYGRR-EDLHS 685
FRGEALSSLCAL LTV TR K+ G R E HS
Sbjct: 123 FRGEALSSLCALGKLTVETRTKDEPVGTRLEFAHS 157
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 107 bits (256), Expect = 1e-23
Identities = 52/120 (43%), Positives = 82/120 (68%)
Frame = +2
Query: 311 IKPINENTVHKICSGQVVLNLAVAVKELVENSLDAGATKIDIRCKNYGMDSIEVSDNGSG 490
I+ + E+ V++I +G+V+ + AVKEL+ENSLDAGA+ + + K+ G+ I+VSD+G G
Sbjct: 18 IRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVAVKDGGLKLIQVSDDGHG 77
Query: 491 VNEDNFAALTLKYHTSKLSDYSDLLGVSSFGFRGEALSSLCALANLTVTTRHKNSNYGRR 670
+ ++ A L ++ TSKLS Y DL + S GFRGEAL+S+ + ++TVTT + +G R
Sbjct: 78 IRFEDLAILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVGHVTVTTITEGQLHGYR 137
>09_06_0205 -
21567467-21567655,21567791-21567876,21567965-21568037,
21568267-21568326,21568887-21568935,21569328-21569431,
21569587-21569640,21569719-21569763,21569817-21569879,
21570415-21570615,21570620-21570797,21570900-21570993,
21571075-21572478,21572560-21572604,21572710-21572788,
21573424-21573589,21573679-21573771,21573872-21573929,
21574063-21574120,21574210-21574367,21575130-21575177,
21575269-21575320,21575404-21575529
Length = 1160
Score = 60.1 bits (139), Expect = 2e-09
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Frame = +2
Query: 311 IKPINENTVHKICSGQVVLNLAVAVKELVENSLDAGATKIDIRCKNYGMDSIEVSDNGSG 490
IK + ++ + S V+ +L+ V+ELV NS+DA A+KIDI N ++V D+G G
Sbjct: 4 IKRLPKSVHSSLRSSIVLFDLSRVVEELVYNSIDANASKIDISV-NARACYVKVEDDGCG 62
Query: 491 VNEDNFAALTLKYHTSKLSD--YSDLLGVSSFGFRGEALSSLCALANLTVTTR 643
+ D + KY TSK + SFG GEAL+SL ++ + V T+
Sbjct: 63 ITRDELVLVGEKYATSKFHNVMVDGEPSSRSFGLNGEALASLSDISVVEVRTK 115
>10_06_0036 - 9914606-9915561,9916287-9916368
Length = 345
Score = 32.3 bits (70), Expect = 0.40
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = +2
Query: 407 LDAGATKIDIRCKNYGMDSIEVSDNGSGVNEDNFAALTLKYHTSKLSDYSDLLGVSSFGF 586
LD +D C G+D E+S GS DN AA S + G SFG
Sbjct: 266 LDRLQEAMDYACSQDGVDCQEISGGGSCFYPDNIAAHASYAFNSYWQKMKHIGGSCSFGG 325
Query: 587 RGEALSSLCALANLT 631
++S ++A+LT
Sbjct: 326 TAVLINSDPSMASLT 340
>02_01_0430 - 3136181-3136248,3136544-3136923,3137545-3137963
Length = 288
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 491 VNEDNFAALTLKYHTSKLSDYSDLLGVSSFGFRGEALSSLCALANLTVTTRHKNSNYGR 667
+ +NF K + S+L + LL + S F GE L S+ +NLT N YG+
Sbjct: 68 LKHNNFTGELSKVNFSRLPNLK-LLDLMSNKFTGEILDSIYRCSNLTTLQLSSNKFYGQ 125
>04_04_1587 + 34630678-34632282
Length = 534
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 560 LLGVSSFGFRGEALSSLCALANLT-VTTRH 646
+L +S+ GF GE +SLC + NLT ++ RH
Sbjct: 255 MLDLSNNGFSGEIPASLCGIRNLTDLSLRH 284
>03_01_0441 + 3418622-3420988
Length = 788
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 485 SGVNEDNFAALTLKYHTSKLSDYSDLLG--VSSFGFR 589
+ + ED FA +++ H + DY LLG VS +G++
Sbjct: 359 TSILEDQFARMSIASHLLLVKDYVTLLGTTVSKYGYQ 395
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,605,632
Number of Sequences: 37544
Number of extensions: 318536
Number of successful extensions: 706
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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