Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d17
         (727 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069833-1|AAL39978.1|  895|Drosophila melanogaster SD07911p pro...   175   5e-44
AE013599-2050|AAF58142.1|  899|Drosophila melanogaster CG8169-PA...   175   5e-44
AF068271-1|AAC19245.1|  893|Drosophila melanogaster mutL homolog...   171   6e-43
AF068257-1|AAC19117.1|  663|Drosophila melanogaster mutL homolog...    99   7e-21
AE013599-613|AAF59117.1|  664|Drosophila melanogaster CG11482-PA...    99   7e-21
BT021951-1|AAX51656.1| 1732|Drosophila melanogaster LD01527p pro...    29   4.9  
AY069041-1|AAL39186.1|  223|Drosophila melanogaster GH03649p pro...    29   4.9  
AE014134-2995|AAF53722.3| 1732|Drosophila melanogaster CG18397-P...    29   4.9  
AE013599-3172|AAM70862.1|  223|Drosophila melanogaster CG30392-P...    29   4.9  

>AY069833-1|AAL39978.1|  895|Drosophila melanogaster SD07911p
           protein.
          Length = 895

 Score =  175 bits (426), Expect = 5e-44
 Identities = 83/142 (58%), Positives = 109/142 (76%)
 Frame = +2

Query: 302 SSDIKPINENTVHKICSGQVVLNLAVAVKELVENSLDAGATKIDIRCKNYGMDSIEVSDN 481
           S  IK I ++TVHKICSGQVVL+LAVAVKELVENS+DAGAT ++I+ K+ G+ S+EVSDN
Sbjct: 24  SGQIKAIGKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQSVEVSDN 83

Query: 482 GSGVNEDNFAALTLKYHTSKLSDYSDLLGVSSFGFRGEALSSLCALANLTVTTRHKNSNY 661
           GSGV E N   +T KYHTSK+ ++ DLLGV +FGFRGEALSSLCAL+++ + TRHK+++ 
Sbjct: 84  GSGVEEMNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSTDV 143

Query: 662 GRREDLHSSNTMVLSRLSCKKG 727
           G + +L      +  R  C +G
Sbjct: 144 GVKVELDHEG-RIKKRSPCARG 164


>AE013599-2050|AAF58142.1|  899|Drosophila melanogaster CG8169-PA
           protein.
          Length = 899

 Score =  175 bits (426), Expect = 5e-44
 Identities = 83/142 (58%), Positives = 109/142 (76%)
 Frame = +2

Query: 302 SSDIKPINENTVHKICSGQVVLNLAVAVKELVENSLDAGATKIDIRCKNYGMDSIEVSDN 481
           S  IK I ++TVHKICSGQVVL+LAVAVKELVENS+DAGAT ++I+ K+ G+ S+EVSDN
Sbjct: 24  SGQIKAIGKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQSVEVSDN 83

Query: 482 GSGVNEDNFAALTLKYHTSKLSDYSDLLGVSSFGFRGEALSSLCALANLTVTTRHKNSNY 661
           GSGV E N   +T KYHTSK+ ++ DLLGV +FGFRGEALSSLCAL+++ + TRHK+++ 
Sbjct: 84  GSGVEEMNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSTDV 143

Query: 662 GRREDLHSSNTMVLSRLSCKKG 727
           G + +L      +  R  C +G
Sbjct: 144 GVKVELDHEG-RIKKRSPCARG 164


>AF068271-1|AAC19245.1|  893|Drosophila melanogaster mutL homolog
           PMS2 protein.
          Length = 893

 Score =  171 bits (417), Expect = 6e-43
 Identities = 83/142 (58%), Positives = 108/142 (76%)
 Frame = +2

Query: 302 SSDIKPINENTVHKICSGQVVLNLAVAVKELVENSLDAGATKIDIRCKNYGMDSIEVSDN 481
           S  IK I ++TVHKICSGQVVL+LAVAVKELVENS+DAGAT ++I+ K+ G+ S+EVSDN
Sbjct: 24  SGQIKAIGKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQSVEVSDN 83

Query: 482 GSGVNEDNFAALTLKYHTSKLSDYSDLLGVSSFGFRGEALSSLCALANLTVTTRHKNSNY 661
           GSGV E N   +T KYHTSK+ ++ DLLGV +FGFRGEALSSLCAL+++ + TRHK+++ 
Sbjct: 84  GSGVEEMNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSTDG 143

Query: 662 GRREDLHSSNTMVLSRLSCKKG 727
            + E  H     +  R  C +G
Sbjct: 144 VKVELDHEGR--IKKRSPCARG 163


>AF068257-1|AAC19117.1|  663|Drosophila melanogaster mutL homolog
           protein.
          Length = 663

 Score = 98.7 bits (235), Expect = 7e-21
 Identities = 44/118 (37%), Positives = 81/118 (68%)
 Frame = +2

Query: 311 IKPINENTVHKICSGQVVLNLAVAVKELVENSLDAGATKIDIRCKNYGMDSIEVSDNGSG 490
           I+ ++E  V++I +G+++   A A+KEL+ENSLDA +T I ++ K  G+  +++ DNG+G
Sbjct: 10  IRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSTHIQVQVKAGGLKLLQIQDNGTG 69

Query: 491 VNEDNFAALTLKYHTSKLSDYSDLLGVSSFGFRGEALSSLCALANLTVTTRHKNSNYG 664
           +  ++ A +  ++ TSKL+ + DL  +++FGFRGEAL+S+  +A+L++ T+      G
Sbjct: 70  IRREDLAIVCERFTTSKLTRFEDLSQIATFGFRGEALASISHVAHLSIQTKTAKEKCG 127


>AE013599-613|AAF59117.1|  664|Drosophila melanogaster CG11482-PA
           protein.
          Length = 664

 Score = 98.7 bits (235), Expect = 7e-21
 Identities = 44/118 (37%), Positives = 81/118 (68%)
 Frame = +2

Query: 311 IKPINENTVHKICSGQVVLNLAVAVKELVENSLDAGATKIDIRCKNYGMDSIEVSDNGSG 490
           I+ ++E  V++I +G+++   A A+KEL+ENSLDA +T I ++ K  G+  +++ DNG+G
Sbjct: 10  IRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSTHIQVQVKAGGLKLLQIQDNGTG 69

Query: 491 VNEDNFAALTLKYHTSKLSDYSDLLGVSSFGFRGEALSSLCALANLTVTTRHKNSNYG 664
           +  ++ A +  ++ TSKL+ + DL  +++FGFRGEAL+S+  +A+L++ T+      G
Sbjct: 70  IRREDLAIVCERFTTSKLTRFEDLSQIATFGFRGEALASISHVAHLSIQTKTAKEKCG 127


>BT021951-1|AAX51656.1| 1732|Drosophila melanogaster LD01527p protein.
          Length = 1732

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
 Frame = +2

Query: 323  NENTVHKICSGQVVLNLAVAVKELVENSLDAGATKIDIRCK---NYGMDSIEVSDNGSGV 493
            NE   ++   G+V  +L   ++EL +  +D      +  C+       D ++  + GSG 
Sbjct: 881  NEEERNERILGEVQESLERQIRELEQTEIDVDTETDETDCEVQLEEQDDGVDGLEMGSGD 940

Query: 494  NEDNFAALTLKYHTSKLSDYSDLLGVSSFGFRGEALSSLCALANLTVTTRHKNSNYGRRE 673
            +   F  ++   + S    Y  LL   S+  R EAL++L A        RH     GR +
Sbjct: 941  DSAVFVTMSDDENASLELRYQALLSDMSWNERAEALATLQA-----YVARHP----GRAQ 991

Query: 674  DLH 682
            +LH
Sbjct: 992  ELH 994


>AY069041-1|AAL39186.1|  223|Drosophila melanogaster GH03649p
           protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +2

Query: 518 TLKYHTSKLSDYSDLLGVSSFGFRGEALSSLC-----ALANLTVTTRHKNSNYGRREDLH 682
           TL  H S L      L + +   RG+ L  +C     A  NL    +H  +NY R EDL+
Sbjct: 155 TLGKHHSFLIRKGARLAMYAMPTRGDLLKKVCSDVEAAKENLPSMMKHMRTNYDRTEDLY 214

Query: 683 S 685
           +
Sbjct: 215 T 215


>AE014134-2995|AAF53722.3| 1732|Drosophila melanogaster CG18397-PA
            protein.
          Length = 1732

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
 Frame = +2

Query: 323  NENTVHKICSGQVVLNLAVAVKELVENSLDAGATKIDIRCK---NYGMDSIEVSDNGSGV 493
            NE   ++   G+V  +L   ++EL +  +D      +  C+       D ++  + GSG 
Sbjct: 881  NEEERNERILGEVQESLERQIRELEQTEIDVDTETDETDCEVQLEEQDDGVDGLEMGSGD 940

Query: 494  NEDNFAALTLKYHTSKLSDYSDLLGVSSFGFRGEALSSLCALANLTVTTRHKNSNYGRRE 673
            +   F  ++   + S    Y  LL   S+  R EAL++L A        RH     GR +
Sbjct: 941  DSAVFVTMSDDENASLELRYQALLSDMSWNERAEALATLQA-----YVARHP----GRAQ 991

Query: 674  DLH 682
            +LH
Sbjct: 992  ELH 994


>AE013599-3172|AAM70862.1|  223|Drosophila melanogaster CG30392-PA
           protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +2

Query: 518 TLKYHTSKLSDYSDLLGVSSFGFRGEALSSLC-----ALANLTVTTRHKNSNYGRREDLH 682
           TL  H S L      L + +   RG+ L  +C     A  NL    +H  +NY R EDL+
Sbjct: 155 TLGKHHSFLIRKGARLAMYAMPTRGDLLKKVCSDVEAAKENLPSMLKHMRTNYDRTEDLY 214

Query: 683 S 685
           +
Sbjct: 215 T 215


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,815,996
Number of Sequences: 53049
Number of extensions: 579551
Number of successful extensions: 1413
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)