Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d16
         (262 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0C752 Cluster: Chromosome undetermined scaffold_154, w...    32   2.9  
UniRef50_A0C1I1 Cluster: Chromosome undetermined scaffold_142, w...    32   2.9  
UniRef50_Q22V81 Cluster: Putative uncharacterized protein; n=4; ...    31   5.1  
UniRef50_Q7NG04 Cluster: Glr3370 protein; n=1; Gloeobacter viola...    30   8.9  
UniRef50_Q5ZWX7 Cluster: Putative uncharacterized protein; n=4; ...    30   8.9  
UniRef50_Q9W2B3 Cluster: CG9304-PA; n=7; Endopterygota|Rep: CG93...    30   8.9  

>UniRef50_A0C752 Cluster: Chromosome undetermined scaffold_154,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_154,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 708

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +2

Query: 116 TDSNFQLEYHQTKHSIYR--LAGVNSIFVSAFISYAVIYINVLKVMEV 253
           TD N+ + Y    HSIYR  +  + ++ V+  +S  V+Y+++LK ++V
Sbjct: 322 TDINWDVIYIWANHSIYRRIIGAIINVIVNIILS-IVVYLSILKQVQV 368


>UniRef50_A0C1I1 Cluster: Chromosome undetermined scaffold_142,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_142,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 577

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -1

Query: 184 INTSQPVNTMFCLVIFQLKVRVCFFSKLFPTVLNRQTSTLFMVLVNSSSKQQLLYNCEN 8
           I  S   + + C    Q  ++ C F  L PT+ + Q   +F    N   KQQL  N EN
Sbjct: 305 IMQSNQQHPLLCQQSQQFTLQSCNFKDLNPTLTSMQQHPMFFQQENQLQKQQLKSNQEN 363


>UniRef50_Q22V81 Cluster: Putative uncharacterized protein; n=4;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1590

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -3

Query: 176 QPAGKYYVLSGDIPAES*SLFFFEIISDSPKQTDVNII 63
           +P+GKY ++   +  +   ++ +  I DSP Q+D++++
Sbjct: 405 EPSGKYMIVPQQVSPDIIGVYQYNTIDDSPDQSDISLM 442


>UniRef50_Q7NG04 Cluster: Glr3370 protein; n=1; Gloeobacter
           violaceus|Rep: Glr3370 protein - Gloeobacter violaceus
          Length = 194

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +1

Query: 70  LTSVCLGLSEIISKKNRL*LSAGISPDKT*YLPAGWC*FHFC---VCIYIICCNIHKCIK 240
           L ++ +G+S+I  ++ +L +          Y+P     F+FC   + +YI+ C  HK +K
Sbjct: 18  LANLNIGISDIKERRRKLQVHCNPGTKVGEYVP-----FYFCPRSIMLYILHCKNHKDLK 72

Query: 241 GNGGKK 258
             GG++
Sbjct: 73  YTGGQQ 78


>UniRef50_Q5ZWX7 Cluster: Putative uncharacterized protein; n=4;
           Legionella pneumophila|Rep: Putative uncharacterized
           protein - Legionella pneumophila subsp. pneumophila
           (strain Philadelphia 1 /ATCC 33152 / DSM 7513)
          Length = 301

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 113 KTDSNFQLEYHQTKHSIYRLAGVNSIFVSAFISYAVI 223
           KTD N  L ++Q++HS +   G++ I +SA ++  V+
Sbjct: 267 KTDYNLPLSHNQSRHSCF---GLDQILISALVNEGVV 300


>UniRef50_Q9W2B3 Cluster: CG9304-PA; n=7; Endopterygota|Rep:
           CG9304-PA - Drosophila melanogaster (Fruit fly)
          Length = 637

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +3

Query: 123 LTFSWNITRQNIVFTGWLVL----IPFLCLHLY 209
           L   W +TRQ I  TGW++L    +P+   H++
Sbjct: 401 LAKGWAVTRQQISRTGWIILMSIWVPYCAFHVF 433


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,807,031
Number of Sequences: 1657284
Number of extensions: 4182047
Number of successful extensions: 10627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10626
length of database: 575,637,011
effective HSP length: 64
effective length of database: 469,570,835
effective search space used: 10330558370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)