Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d16
         (262 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    25   1.7  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   2.2  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   2.2  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    24   3.8  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    24   3.8  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   5.1  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    23   5.1  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    23   6.7  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    23   6.7  
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    23   6.7  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    23   8.8  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    23   8.8  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    23   8.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   8.8  

>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 214 CCNIHKCIKGN 246
           CCN+  C+KGN
Sbjct: 113 CCNVPVCVKGN 123


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 184 FHFCVCIYIICCNIHKCIKGNGGK 255
           FH  V +  + C + KC K N GK
Sbjct: 221 FHLIVLVVCMICLLAKCPKFNTGK 244


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 138 NITRQNIVFTGWLVLIPF-LCLH 203
           +I R  + + GW  ++PF LC H
Sbjct: 388 DIIRNEVAYAGWSEVMPFILCSH 410


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 119 DSNFQLEYHQTKHSIYRLAGVNSIFVSAFISYAVIYINVLKVME 250
           DS  + EYH+ +  +   A +  I      + A+I +  LK+ +
Sbjct: 799 DSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQLRELKIRQ 842


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 187 HFCVCIYIICCNIHKCIKGNGGK 255
           H CV   ++  N+++ IK NG K
Sbjct: 773 HLCVATELLGKNLYELIKSNGFK 795


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 157  MFCLVIFQLKVRVCFFSKLFPTVLNRQTSTLF 62
            M  L+IF L   + +F        NR  STLF
Sbjct: 926  MDLLIIFPLSAAMSYFDPAQNLTSNRPNSTLF 957


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 60  INNVDVCLFRTVGNNFEKKQTLTF 131
           INN+D      + N  EKK+  TF
Sbjct: 749 INNMDETAIHMLMNQLEKKENRTF 772


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 175 WC*FHFCVCIYIICCNIHKCI 237
           WC  +F V + I C  IH+ +
Sbjct: 697 WCAINFPVVLCIDCSGIHRSL 717


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 144 TRQNIVFTGWLVLIPFLCLHLYHM 215
           TR  + F  W VL+P +  H++++
Sbjct: 93  TRVLLTFFCWTVLLPLIFKHVWNL 116


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 109 SKLFPTVLNRQTSTLFMVLVNSSSKQQLLY 20
           SKLF ++  ++   + MV ++++ K  +LY
Sbjct: 6   SKLFQSLFGKREMRILMVGLDAAGKTTILY 35


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 120  SVFFRNYFRQS*TDRRQHYLWSS 52
            SVF +NY+  S   R   ++WS+
Sbjct: 2191 SVFLQNYWMSSVYGRSWAFMWSA 2213


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 164 YRLAGVNSIFVSAFISYAVIYINVL 238
           YR+ GVN  F    I   + Y+ VL
Sbjct: 395 YRMVGVNKFFDREEIRDLIAYLRVL 419


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 189 MELTPASR*ILCFVW 145
           + LT ASR ILC VW
Sbjct: 736 LNLTCASRVILCDVW 750


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +3

Query: 9    FSQLYKSCCLLEEFTRTINNVDVCLFRTVGNNFEKKQTLTFSWNIT-----RQNIVFTGW 173
            F+  Y      + FTR+ N  +   F+ + N  +KK     +W  T     +    FT W
Sbjct: 2382 FTTFYSLLDQTKLFTRSSNITESLSFKELCNYLKKKICYILAWCCTGDTDAKSRERFTHW 2441

Query: 174  LV 179
            L+
Sbjct: 2442 LM 2443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,072,964
Number of Sequences: 5004
Number of extensions: 19107
Number of successful extensions: 60
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)