Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d16
         (262 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0022 - 15536811-15536899,15537485-15537664,15537706-155379...    27   1.6  
04_03_1036 - 21895764-21895817,21895928-21895975,21896051-218961...    25   6.3  
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468     25   8.4  

>06_03_0022 -
           15536811-15536899,15537485-15537664,15537706-15537982,
           15538680-15538883,15539431-15539496,15539933-15539953,
           15541622-15541731,15543244-15544236,15544928-15544955,
           15545035-15545093,15545177-15545204,15545453-15545475,
           15545784-15545853,15546980-15547033,15547127-15547169,
           15548126-15548175
          Length = 764

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 196 HKNGINTSQPVNTMFCLVIFQLKVRVCFFSKLFPTVLNRQTST 68
           + +G+      NTMFCL +  L   +   S++F TV+  +  T
Sbjct: 517 YTSGVLQDGKENTMFCLFVLSLLNSIHDLSRMFDTVVAAKEMT 559


>04_03_1036 -
           21895764-21895817,21895928-21895975,21896051-21896154,
           21896624-21896721,21897838-21897916,21898039-21898102,
           21898176-21898294,21898434-21898686,21899273-21899279,
           21899956-21900013,21900300-21900353,21900863-21901055
          Length = 376

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 87  RTVGNNFEKKQTLTFSWNITRQNIVFTGWLVLIPFLCLHLYHML 218
           R  GN FE  +T  F+   +  N +F G      FLC +++  L
Sbjct: 60  RGSGNGFEGLKTNGFASMSSSTNSLFDGKGEFTTFLCFYIFKCL 103


>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
          Length = 898

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 12  SQLYKSCCLLEEFTRTINNVDVCLFRT 92
           S++Y+S  + EE  RT+ N D+  F T
Sbjct: 257 SEIYRSLPVREEILRTLLNCDLIGFHT 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,338,006
Number of Sequences: 37544
Number of extensions: 106865
Number of successful extensions: 244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)