Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d16
         (262 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    26   3.2  
AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical ...    26   3.2  
AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical ...    26   3.2  
U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    25   5.6  
AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z81586-9|CAB04699.2|  676|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U64598-1|AAK39215.2|  330|Caenorhabditis elegans Serpentine rece...    25   9.8  
AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -1

Query: 196 HKNGINTSQPVNTMFCLVIFQLKVRVCFFSKLFPTVLNRQTSTLFMVLVNS----SSKQQ 29
           H+N +N +   NT+   ++   K+ +     L+  +LN+  S + ++ V         ++
Sbjct: 444 HENTVNPTVEFNTINKEIVGSKKINILLPKHLYKKLLNKNKSNISIIKVKDVYCLKQDEK 503

Query: 28  LLYNC 14
           LL +C
Sbjct: 504 LLKHC 508


>AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4b protein.
          Length = 833

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 101 ISDSPKQTDVNIIYGPRKFLE*TTAFV 21
           +SD   QTD N +  P KFLE T   V
Sbjct: 425 LSDLLNQTDFNCLRPPNKFLEDTPLIV 451


>AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4a protein.
          Length = 877

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 101 ISDSPKQTDVNIIYGPRKFLE*TTAFV 21
           +SD   QTD N +  P KFLE T   V
Sbjct: 425 LSDLLNQTDFNCLRPPNKFLEDTPLIV 451


>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 119 DSNFQLEYHQTKHSIYRLAGVNSIFVSAFISYAVIYINVLKV 244
           DS  +L Y    H +YR +   S+ VS+    A+IY    K+
Sbjct: 6   DSVCELAYQLAYHPVYRSSQFWSMLVSSLSIPALIYFITRKI 47


>AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical
           protein W10C4.1 protein.
          Length = 398

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 15  QLYKSCCLLEEFTRTINNVDVCLFRTVGNNFEKKQTLTFSWNITRQNIVFTGWLVL-IPF 191
           QL  S   LE F  T+    +CLF  VGN       +   + ++R NI  T   V  + F
Sbjct: 12  QLRLSGSNLEAFLYTVLFPPICLFGVVGNALTILVLVNNDF-MSRANIFLTCLAVCDVSF 70

Query: 192 LCLHLYHML 218
           L L + H L
Sbjct: 71  LILIIPHSL 79


>Z81586-9|CAB04699.2|  676|Caenorhabditis elegans Hypothetical
           protein T05F1.11 protein.
          Length = 676

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 85  NRQTSTLFMVLV-NSSSKQQLLYNCENL 5
           NR    L   L+ N  +K+++L NCENL
Sbjct: 233 NRNLLKLINALLDNDETKKEVLVNCENL 260


>Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical
           protein T04A8.15 protein.
          Length = 718

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 105 FEKKQTLTFSWNITRQNIVF 164
           FEK Q L  SW +++ N+ F
Sbjct: 129 FEKPQELPKSWELSKNNVKF 148


>Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical
           protein F58B3.5 protein.
          Length = 917

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 196 HKNGINTSQPVNTMFC 149
           HKNG  +SQ V+ ++C
Sbjct: 145 HKNGYTSSQSVDQLYC 160


>Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical
           protein F22D6.10 protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 249 SITFNTFMYITAYDINADTKMEL 181
           ++ F TFMY   YD +++ + EL
Sbjct: 22  ALLFTTFMYNDLYDFHSEVEEEL 44


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 79  QTSTLFMVLVNSSSKQQLLYNCENLC 2
           QT  + +  +NS  KQQ  YNC   C
Sbjct: 535 QTYKIQVQQMNSQQKQQRQYNCVPAC 560


>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
           protein B0198.3 protein.
          Length = 1050

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 170 AGKY-YVLSGDIPAES*SLFFFEIISDSPKQTDVNIIY 60
           AGK  +VL   +P E+ ++FF E+++      D  I+Y
Sbjct: 169 AGKVLFVLDDGVP-ETENVFFVEVVARDADDEDTYIVY 205


>U64598-1|AAK39215.2|  330|Caenorhabditis elegans Serpentine
           receptor, class v protein6 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/35 (22%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
 Frame = +2

Query: 140 YHQTKHSIYRLAGVN---SIFVSAFISYAVIYINV 235
           + ++ +++++  G     S+F+S+F+S+ V+ +N+
Sbjct: 209 WKKSSNTVFKKTGATAERSLFISSFLSFCVLMLNL 243


>AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical
           protein Y40D12A.1a protein.
          Length = 635

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 36  LLEEFTRTINNVDVCLFRTVGNNFEKKQTLTFSWNITRQNIV 161
           LLE+ + T N+ D C +R   +N  +  TL    N+T ++I+
Sbjct: 477 LLEKVS-TKNSADECDWRKNFSNSNRNYTLKLDTNVTIEHIL 517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,898,501
Number of Sequences: 27780
Number of extensions: 107479
Number of successful extensions: 297
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)