Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d12
         (552 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5UXU7 Cluster: Ferredoxin-like protein; n=3; Chlorofle...    36   0.83 
UniRef50_A6C4N0 Cluster: Putative uncharacterized protein; n=1; ...    33   3.3  
UniRef50_Q4SL02 Cluster: Chromosome 17 SCAF14563, whole genome s...    32   7.7  

>UniRef50_A5UXU7 Cluster: Ferredoxin-like protein; n=3;
           Chloroflexaceae|Rep: Ferredoxin-like protein -
           Roseiflexus sp. RS-1
          Length = 114

 Score = 35.5 bits (78), Expect = 0.83
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +2

Query: 5   KDKISKYRKFTVQNKSKMCDRMDAINKLQTVMSAIRGGCSGCPSPCNSTRNCTPC---CS 175
           K  +++Y +       + CD       L  +++ + G      +PC   R  TPC   CS
Sbjct: 3   KPHMNRYARHIFICTGRFCDPQGQAIHLYALLARLLGPLGRYENPCRVKRGTTPCLGVCS 62

Query: 176 GGSLVTVY 199
           GG +  VY
Sbjct: 63  GGPIAVVY 70


>UniRef50_A6C4N0 Cluster: Putative uncharacterized protein; n=1;
           Planctomyces maris DSM 8797|Rep: Putative
           uncharacterized protein - Planctomyces maris DSM 8797
          Length = 231

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 80  NKLQTVMSAIRGGCSGCPSPCNSTRNCTPCCSGGSLVTVYSQV 208
           ++ Q +M      CS C  PCN+  +C PC +GG   T+   V
Sbjct: 55  HRAQRMMKHCCNPCSSC-DPCNTCNSCDPCGAGGFGSTIPGMV 96


>UniRef50_Q4SL02 Cluster: Chromosome 17 SCAF14563, whole genome
           shotgun sequence; n=4; Clupeocephala|Rep: Chromosome 17
           SCAF14563, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 608

 Score = 32.3 bits (70), Expect = 7.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -3

Query: 196 NCDQRSSAAARSTISGGVTGRWASAATASNCGHNS 92
           N D   S++++ST SG ++GR    + + +CGH+S
Sbjct: 178 NSDSGRSSSSKSTGSGSLSGRGQPLSDSGSCGHSS 212


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,177,902
Number of Sequences: 1657284
Number of extensions: 10628162
Number of successful extensions: 29857
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29792
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)