Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3d09
(539 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 33 0.20
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19) 32 0.34
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 31 0.60
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 30 1.1
SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_30342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015) 28 5.6
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17) 27 9.8
SB_51299| Best HMM Match : Keratin_B2 (HMM E-Value=8) 27 9.8
SB_20919| Best HMM Match : WSC (HMM E-Value=1.1e-12) 27 9.8
SB_15426| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6) 27 9.8
SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59) 27 9.8
SB_2503| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6) 27 9.8
SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36) 27 9.8
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 128 NEEIAKRIGSEYRTLPTYEKGLYEEVFKRHYSLHDNELLKCRWTQYKKHLEGRV 289
N EI+K +G E+R +P EK Y E R H + R+ +KH +G++
Sbjct: 37 NAEISKILGDEWRKMPESEKLPYTEEALRLRRQHKVDHPNYRYKPRRKHKQGQL 90
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 31.9 bits (69), Expect = 0.34
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 125 VNEEIAKRIGSEYRTLPTYEKGLYEEVFKRHYSLHDNE 238
+N EI+KR+G E+ +L EK Y E KR LH +
Sbjct: 34 LNSEISKRLGLEWNSLTLDEKQPYVEEAKRLRELHKKD 71
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 31.9 bits (69), Expect = 0.34
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +2
Query: 95 EIKRKKPYDHV---NEEIAKRIGSEYRTLPTYEKGLYEEVFKRHYSLHDNE 238
E +RK D+ N EI+KR+GSE++ L EK Y + +R ++H E
Sbjct: 802 ERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQEKRPYIDEARRLRAVHMKE 852
>SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19)
Length = 811
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 299 FQFPDVRDLHFYNCAIRFLPSESIHRRTKYGFKL 400
FQ P ++ L+ +C ++ LPS+ H RT G +L
Sbjct: 97 FQLPKLKQLYLNDCQLKTLPSDIGHLRTLEGLQL 130
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 31.1 bits (67), Expect = 0.60
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 68 LKDIYAD-CAEIKRKKPYDHVNEEIAKRIGSEYRTLPTYEKGLYEEVFKRHYSLHDNELL 244
++++Y D A+IKR K + +NE RI ++Y + K SLH EL
Sbjct: 1587 IENLYRDRTADIKRVKRWRRLNETELLRIRAKYSQAKESFNQALAQYNKSRASLHSCELS 1646
Query: 245 KC 250
KC
Sbjct: 1647 KC 1648
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 95 EIKRKKPYDHVNEEIAKRIGSEYRTLPTYEKGLYEEVFKRHYSLHDNE 238
+I ++ P H N EI+KR+GSE++ L +K + E K+ + H E
Sbjct: 344 KIAQENPKMH-NSEISKRLGSEWKQLADDDKKPFVEEAKKLRAQHMKE 390
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 95 EIKRKKPYDHVNEEIAKRIGSEYRTLPTYEKGLYEEVFKRHYSLHDNE 238
+I ++ P H N EI+KR+GSE++ L +K + E K+ + H E
Sbjct: 27 KIAQENPKMH-NSEISKRLGSEWKQLADDDKKPFVEEAKKLRAQHMKE 73
>SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 65 TLKDIYADCAEIKRKKPYDHVNEEIAKRIGSEY 163
T++ YAD + I P DH ++ R+G +Y
Sbjct: 148 TIEQFYADLSSILNSVPADHPARDLNARVGRDY 180
>SB_30342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 377 CDVSIRTARIEWRSCRSEDLSRRETG 300
C++ + TA+ W++ ++ LSRR TG
Sbjct: 24 CEIRVGTAKHCWKAYTADQLSRRYTG 49
>SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
Length = 728
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 316 HVGKL-EGRKHPTLQMFLVLCPSAFQQLVIVQRIVPLKHFFVKTFFVRRQRSVLA 155
H +L + R + + + L S F V+VQ I+ L+H F +++ VR +V A
Sbjct: 232 HTWRLRDARVFVNIILTVALPYSLFFVFVVVQSILKLQHDFYRSWIVRNVNAVFA 286
>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
Length = 755
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 341 AIRFLPSESIHRRTKYGFKLKPGPGVDDFGQMP 439
A ++P + HR TKY +K +P P + D+ P
Sbjct: 512 AANYIPIKDPHRSTKYRYK-RPQPALCDYLLQP 543
>SB_51299| Best HMM Match : Keratin_B2 (HMM E-Value=8)
Length = 275
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 341 AIRFLPSESIHRRTKYGFKLKPGPGVDDFGQMP 439
A ++P + HR TKY +K +P P + D+ P
Sbjct: 35 AANYIPIKDPHRSTKYRYK-RPQPALCDYLLQP 66
>SB_20919| Best HMM Match : WSC (HMM E-Value=1.1e-12)
Length = 531
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 47 YFYME-YTLKDIYADCAEIKRKKPYDHVNEEIAKRIGSEYRTLPTYEK 187
Y+Y+E Y D ADCA + + P H I KR+ +R LP K
Sbjct: 17 YYYLEVYHKADKLADCASVAVEFPSGHFEGPI-KRVHLSWR-LPAIPK 62
>SB_15426| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6)
Length = 224
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 341 AIRFLPSESIHRRTKYGFKLKPGPGVDDFGQMP 439
A ++P + HR TKY +K +P P + D+ P
Sbjct: 35 AANYIPIKDPHRSTKYRYK-RPQPALCDYLLQP 66
>SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)
Length = 351
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 341 AIRFLPSESIHRRTKYGFKLKPGPGVDDFGQMP 439
A ++P + HR TKY +K +P P + D+ P
Sbjct: 35 AANYIPIKDPHRSTKYRYK-RPQPALCDYLLQP 66
>SB_2503| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6)
Length = 224
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 341 AIRFLPSESIHRRTKYGFKLKPGPGVDDFGQMP 439
A ++P + HR TKY +K +P P + D+ P
Sbjct: 35 AANYIPIKDPHRSTKYRYK-RPQPALCDYLLQP 66
>SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36)
Length = 436
Score = 27.1 bits (57), Expect = 9.8
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 95 EIKRKKPYDHVNEEIAKRIGSEYRTLPTYEKGLYEEVFKRHYSLHDNELLKCRWTQYKKH 274
EIKR + D+ + ++ ++Y L KG + EV+K Y L ++ + C+ Q K
Sbjct: 146 EIKRLQHEDNSRFKNHPKLNNQYLLLSLLGKGGFSEVYK-GYDLVNHRYVACKIHQLIKE 204
Query: 275 LEGRVFAPFQFPDVRDLHFYNCA-IRF 352
+ A + V+ ++F +C +RF
Sbjct: 205 WKEDKKANY-IKYVQYINFKSCVRLRF 230
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,738,511
Number of Sequences: 59808
Number of extensions: 311015
Number of successful extensions: 793
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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