Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d07
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)              78   5e-15
SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)              78   5e-15
SB_53948| Best HMM Match : Robl_LC7 (HMM E-Value=9.3e-25)              74   9e-14
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   8e-09
SB_13938| Best HMM Match : Robl_LC7 (HMM E-Value=2.5e-17)              56   1e-08
SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   9e-06
SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
          Length = 160

 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 35/97 (36%), Positives = 62/97 (63%)
 Frame = +1

Query: 100 MANEAEDTIRKLSTYKXXXXXXXXXXXXIPIKTTLDNHISVQYAGLLTALVDKAKTVVRD 279
           MA+  E+ ++++ ++K             PI++ LDN  ++ YA     L   A++ VRD
Sbjct: 64  MASSVENILKRIQSHKGVIGSIVVNSEGTPIRSDLDNSTTLLYASNCHHLAKLARSTVRD 123

Query: 280 LDPSNDLTFLRIRSKKSEVMVAPDKEFILIVVQNPVE 390
           +DP NDL+ LR++S+K E+++AP +E++LIVVQ+ +E
Sbjct: 124 IDPQNDLSILRVKSRKYEIIIAPYEEYMLIVVQSDLE 160


>SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
          Length = 101

 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 35/97 (36%), Positives = 62/97 (63%)
 Frame = +1

Query: 100 MANEAEDTIRKLSTYKXXXXXXXXXXXXIPIKTTLDNHISVQYAGLLTALVDKAKTVVRD 279
           MA+  E+ ++++ ++K             PI++ LDN  ++ YA     L   A++ VRD
Sbjct: 5   MASSVENILKRIQSHKGVIGSIVVNSEGTPIRSDLDNSTTLLYASNCHHLAKLARSTVRD 64

Query: 280 LDPSNDLTFLRIRSKKSEVMVAPDKEFILIVVQNPVE 390
           +DP NDL+ LR++S+K E+++AP +E++LIVVQ+ +E
Sbjct: 65  IDPQNDLSILRVKSRKYEIIIAPYEEYMLIVVQSDLE 101


>SB_53948| Best HMM Match : Robl_LC7 (HMM E-Value=9.3e-25)
          Length = 101

 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 32/92 (34%), Positives = 57/92 (61%)
 Frame = +1

Query: 106 NEAEDTIRKLSTYKXXXXXXXXXXXXIPIKTTLDNHISVQYAGLLTALVDKAKTVVRDLD 285
           +E E+ ++++  +             + I++T+DN  +  Y   + ++   A++ VRDLD
Sbjct: 5   DEVEEVLKRIINHPGVTGSIITNPEGVAIRSTMDNSTTQIYLSNIQSMTQMARSAVRDLD 64

Query: 286 PSNDLTFLRIRSKKSEVMVAPDKEFILIVVQN 381
           P NDL FLRIRS+K E++VAP+ ++ LIV+Q+
Sbjct: 65  PLNDLKFLRIRSRKYEILVAPENDYTLIVIQS 96


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 35/95 (36%), Positives = 55/95 (57%)
 Frame = +1

Query: 94  IKMANEAEDTIRKLSTYKXXXXXXXXXXXXIPIKTTLDNHISVQYAGLLTALVDKAKTVV 273
           I   +E E+T++++S +              PIK+++D   +  YA     L   A + V
Sbjct: 106 IMTTSEVENTLQRISLHPGVMGWLVINNQGEPIKSSMDIPTTQLYASEFAPLAHFAHSAV 165

Query: 274 RDLDPSNDLTFLRIRSKKSEVMVAPDKEFILIVVQ 378
           RD+DP N+L F+R+R+ K E MVAPD E++LIV+Q
Sbjct: 166 RDMDPQNELRFIRVRTNKMEFMVAPDNEYLLIVIQ 200


>SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 26/85 (30%), Positives = 49/85 (57%)
 Frame = +1

Query: 100 MANEAEDTIRKLSTYKXXXXXXXXXXXXIPIKTTLDNHISVQYAGLLTALVDKAKTVVRD 279
           MA + E  + ++ ++K              ++T++D   + QYA +   L   A+  VRD
Sbjct: 1   MALQVERRLERIQSHKGVLGSAVINPEGKVLRTSMDTTTTNQYANMCKNLASMARGTVRD 60

Query: 280 LDPSNDLTFLRIRSKKSEVMVAPDK 354
           +DP++DL  LR+R+K+ EV++AP++
Sbjct: 61  VDPADDLLILRVRTKEHEVIIAPER 85


>SB_13938| Best HMM Match : Robl_LC7 (HMM E-Value=2.5e-17)
          Length = 111

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 24/63 (38%), Positives = 40/63 (63%)
 Frame = +1

Query: 190 IKTTLDNHISVQYAGLLTALVDKAKTVVRDLDPSNDLTFLRIRSKKSEVMVAPDKEFILI 369
           + T+LD   +  Y      LV+ A+  +RD DP +DL F R+R+ K E+++AP+ ++ LI
Sbjct: 38  LHTSLDTTQTTAYTQQCVPLVELARATIRDTDPEDDLRFFRVRTLKHELIIAPEDKYTLI 97

Query: 370 VVQ 378
           V+Q
Sbjct: 98  VIQ 100


>SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = +1

Query: 184 IPIKTTLDNHISVQYAGLLTALVDKAKTVVRDLDPSNDLTFLR 312
           +PI++TLDN  ++QY  +   +   A++VVRD DP+NDL  LR
Sbjct: 289 MPIRSTLDNSSTLQYVNMCKTMCGIARSVVRDTDPTNDLKILR 331


>SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1356

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 234 PIDRVGGQSENCRARPGSV 290
           P  R GG+SE CRA P +V
Sbjct: 232 PCSRTGGRSEACRATPTAV 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,437,089
Number of Sequences: 59808
Number of extensions: 265687
Number of successful extensions: 519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)