Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d07
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   0.88 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   0.88 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   3.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   8.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 362 INSLSGATITSLFLLLILKNVKSLDGSR 279
           ++ +SGAT  +LFL      ++SLD SR
Sbjct: 358 LSMISGATCYALFLGHATNLIQSLDSSR 385


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 362 INSLSGATITSLFLLLILKNVKSLDGSR 279
           ++ +SGAT  +LFL      ++SLD SR
Sbjct: 326 LSMISGATCYALFLGHATNLIQSLDSSR 353


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 528 FYSVLIIL*NLSQTAVLI 475
           FYSVL+I+  +  T VLI
Sbjct: 43  FYSVLMIISAIGNTTVLI 60


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 535 RQLLFCLNNSMKFVSNCRTN 476
           ++LLF  N+ + F++ C TN
Sbjct: 254 KRLLFSHNDRLGFLTFCPTN 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,507
Number of Sequences: 438
Number of extensions: 2655
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)