Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d06
         (719 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CGQ2 Cluster: Chromosome undetermined scaffold_18, wh...    34   3.1  
UniRef50_Q8A6S5 Cluster: Two-component system sensor histidine k...    33   9.4  
UniRef50_Q5ZIB2 Cluster: Fas-binding factor 1 homolog; n=2; Gall...    33   9.4  

>UniRef50_A0CGQ2 Cluster: Chromosome undetermined scaffold_18, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_18,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 586

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -3

Query: 294 RCFLIFDKASVIHFSSANN*VSSAIRLFNLTADIFNIETLKNII 163
           RC +  D  +++ F SA+  + S + +FN+   + ++E LK+II
Sbjct: 460 RCIVTKDDDNILQFRSAHKEIDSQLNIFNILKRLQDVEKLKHII 503


>UniRef50_Q8A6S5 Cluster: Two-component system sensor histidine
           kinase; n=1; Bacteroides thetaiotaomicron|Rep:
           Two-component system sensor histidine kinase -
           Bacteroides thetaiotaomicron
          Length = 653

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 6/43 (13%)
 Frame = -3

Query: 153 YYQNYHNYYRILRK-----RYPQNSVQLLMQIT-NIGVGFQIE 43
           YY  Y +YYRI ++      Y QN+++LL +++ N G+ ++IE
Sbjct: 290 YYNVYSHYYRITKEYEKALSYSQNAIELLSEVSDNEGLNYKIE 332


>UniRef50_Q5ZIB2 Cluster: Fas-binding factor 1 homolog; n=2; Gallus
           gallus|Rep: Fas-binding factor 1 homolog - Gallus gallus
           (Chicken)
          Length = 1132

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 182 SMLKMSAVKLNKRIAEETQLLAEEKW-ITDALSKIKKQRNCLQIER 316
           S L+    K+  R++E+T+LL +E+W +T   SK++  +  L+ +R
Sbjct: 795 SRLQEVIAKMEARLSEQTRLLEQERWRVTAVQSKVESLQRSLEEQR 840


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,423,351
Number of Sequences: 1657284
Number of extensions: 8806188
Number of successful extensions: 21685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21672
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)