Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d05
         (840 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3LWI4 Cluster: Putative uncharacterized protein; n=1; ...    38   0.31 
UniRef50_Q7VF42 Cluster: Putative uncharacterized protein; n=2; ...    35   2.9  
UniRef50_Q4YND5 Cluster: Putative uncharacterized protein; n=1; ...    35   2.9  
UniRef50_A0BX36 Cluster: Chromosome undetermined scaffold_133, w...    33   6.8  

>UniRef50_Q3LWI4 Cluster: Putative uncharacterized protein; n=1;
           Bigelowiella natans|Rep: Putative uncharacterized
           protein - Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 366

 Score = 37.9 bits (84), Expect = 0.31
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = -3

Query: 664 LDSFNLSTPLSPLTNDNIT*QITSHNFNKLNISIHITHTTLHYSY--NLPLSFIFFSL-P 494
           L  FN  TP+     +N+  QI+S   N+L  +I+  H T+  +Y  N P S++F  L P
Sbjct: 64  LKYFNDPTPMDNYFPNNLNIQISSTRINELLDTINEVHKTISINYWKNAPNSYVFHKLNP 123

Query: 493 KFSH 482
           + SH
Sbjct: 124 EISH 127


>UniRef50_Q7VF42 Cluster: Putative uncharacterized protein; n=2;
           Helicobacter hepaticus|Rep: Putative uncharacterized
           protein - Helicobacter hepaticus
          Length = 600

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = -3

Query: 685 LFYL*LLLDSFNLSTPLSPLTNDN------IT*QITSHNFNKLNISIHITHTTLH 539
           LF+L  L  +FN+S  L PL   N      ++ Q+ SHN   + +SI   HT +H
Sbjct: 267 LFFLIFLYIAFNISIHLQPLAKSNKDLPTLLSTQLLSHNNQYIELSIQGAHTFIH 321


>UniRef50_Q4YND5 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 113

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 555 HIQPYIIHITFHYLLYFSHFLNFPTFCTYSFNYFN 451
           H+  +    TF YL  F HF NF TF  Y FN+F+
Sbjct: 47  HVVHFFNFFTFFYLFNFFHFFNFFTF-FYLFNFFH 80


>UniRef50_A0BX36 Cluster: Chromosome undetermined scaffold_133,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_133,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 342

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 24/72 (33%), Positives = 30/72 (41%)
 Frame = -3

Query: 628 LTNDNIT*QITSHNFNKLNISIHITHTTLHYSYNLPLSFIFFSLPKFSHFLHIFVQLF*Y 449
           LT+  I     S  FN  N+ I I          L LSF FF+    +  +H F  LF Y
Sbjct: 257 LTSQIIFITFYSSQFNN-NMKIIINFIECEIGIYLYLSFCFFNQQLTTQPIHFFQLLFGY 315

Query: 448 NTKTKFLTSIIK 413
           N K      +IK
Sbjct: 316 NNKRSIFQKVIK 327


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,850,156
Number of Sequences: 1657284
Number of extensions: 10344033
Number of successful extensions: 20515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20462
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)