Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d05
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z75552-3|CAA99940.1|  465|Caenorhabditis elegans Hypothetical pr...    30   2.4  
L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical
           protein R186.2a protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +3

Query: 285 Y*LYYKYNR*SSRGGSTHF*YKHIYSRFLESF*VSFIVLFYCCFIIDVRN 434
           Y LY+KY++ +S+G    F +K + S FL  F +  +V   C F++ +RN
Sbjct: 122 YTLYFKYHKLNSKG--PLFGWKLVRSLFL--FYIPCLVSMCCAFVVVLRN 167


>Z75552-3|CAA99940.1|  465|Caenorhabditis elegans Hypothetical
           protein W04D2.3 protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 589 NFNKLNISIHITHTTLHYSYNLPLSFIFFSLPKFSHFLHIFVQLF*YN 446
           N  +  + +H T T L++ Y+       +   K  +FL++F QL+  N
Sbjct: 174 NMERKKVQVHKTVTFLNFQYSSGFISWIYLFTKVLYFLNVFAQLYLMN 221


>L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical
           protein C14B9.3 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 369 LESF*VSFIVLFYCCFIIDVRNFVFVLY*NN*TNMCKKWENLGSEKNIK-DNGRLYE 536
           +E F +     F+  F+ID+RN  F+ +  + +  C+  + +  +K  K ++ R +E
Sbjct: 283 MEYFIIIAYATFHLSFLIDIRNISFICFPRSSSGECEPIDPINFKKGAKYEHCRAFE 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,094
Number of Sequences: 27780
Number of extensions: 270088
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)