Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d05
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 546 PYIIHITFHYLLYFSHFLNFPTFCTYS-FNYFNITQKQ 436
           P+     F +LLY S F+      TY+ F Y +  QK+
Sbjct: 222 PFTYRYGFSFLLYVSGFITTEVAGTYAIFLYISWHQKE 259


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 379 KDSRNRL*ICLYQKCV 332
           K  RNR   C YQKC+
Sbjct: 156 KRQRNRCQYCRYQKCL 171


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 379 KDSRNRL*ICLYQKCV 332
           K  RNR   C YQKC+
Sbjct: 156 KRQRNRCQYCRYQKCL 171


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 631 PLTNDNIT*QITSHNFNKLNISIHITHTTLHYSYNLPLSFIFFS 500
           P   + IT Q     +  +  +I I   TL+Y +NL +  +  S
Sbjct: 166 PGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 631 PLTNDNIT*QITSHNFNKLNISIHITHTTLHYSYNLPLSFIFFS 500
           P   + IT Q     +  +  +I I   TL+Y +NL +  +  S
Sbjct: 166 PGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 631 PLTNDNIT*QITSHNFNKLNISIHITHTTLHYSYNLPLSFIFFS 500
           P   + IT Q     +  +  +I I   TL+Y +NL +  +  S
Sbjct: 166 PGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 631 PLTNDNIT*QITSHNFNKLNISIHITHTTLHYSYNLPLSFIFFS 500
           P   + IT Q     +  +  +I I   TL+Y +NL +  +  S
Sbjct: 166 PGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 631 PLTNDNIT*QITSHNFNKLNISIHITHTTLHYSYNLPLSFIFFS 500
           P   + IT Q     +  +  +I I   TL+Y +NL +  +  S
Sbjct: 166 PGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 631 PLTNDNIT*QITSHNFNKLNISIHITHTTLHYSYNLPLSFIFFS 500
           P   + IT Q     +  +  +I I   TL+Y +NL +  +  S
Sbjct: 166 PGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 209


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 631 PLTNDNIT*QITSHNFNKLNISIHITHTTLHYSYNLPLSFIFFS 500
           P   + IT Q     +  +  +I I   TL+Y +NL +  +  S
Sbjct: 234 PGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 277


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 631 PLTNDNIT*QITSHNFNKLNISIHITHTTLHYSYNLPLSFIFFS 500
           P   + IT Q     +  +  +I I   TL+Y +NL +  +  S
Sbjct: 234 PGKKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCVLIS 277


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 637 LSPLTNDNIT*QITSHNFNKLN 572
           LSPLT +     ++SHN N +N
Sbjct: 256 LSPLTQNLYYSALSSHNLNYVN 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,477
Number of Sequences: 438
Number of extensions: 3619
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)