Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3d03
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 29 0.98
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 2.3
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 27 3.9
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 27 3.9
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 6.9
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 6.9
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 26 6.9
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 9.1
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 25 9.1
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 25 9.1
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 28.7 bits (61), Expect = 0.98
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 246 VLSIPTALFSAKVKRISDVAF--HRFPTVIHEQFLGFVGPN 130
++++PT L S R S +F HR PT Q LG VG N
Sbjct: 72 IINLPTNLESEVTHRYSANSFKLHRLPTPRPGQVLGLVGTN 112
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -3
Query: 288 EQRSICSIMCKLEFVLSIPTALFSAKVKRISDVAFHRFPTVIHEQFLGFVGPNVPSIRYS 109
+ S CS+ + EF++ I +FS R P EQF + GP++ +R S
Sbjct: 270 DDSSYCSMFVETEFIVEIAQTVFSFVQVR------GTVPCFWEEQFSSWYGPSISFLRSS 323
Query: 108 FAN 100
A+
Sbjct: 324 QAS 326
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 325 LRNKPRHNVKRLRAEVNLFNNVQIRICSQHTNSSVQCESKAYF 197
L N P +V +LR +N ++V + SQ+T S V K YF
Sbjct: 496 LVNSPLSSVHQLREALNHSSSVTKEVLSQYTPSVVIGVLKLYF 538
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 26.6 bits (56), Expect = 3.9
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Frame = +2
Query: 158 SWMTVGNLWNATSEIRFTFALNRA-----VGMLRTNS--NLH--IIEQIDLCSQS----F 298
SW TV N WN+ S+ TF + A G + NS +LH I E DL S S +
Sbjct: 460 SWTTVNNDWNSVSKSDQTFENDGASKVVPAGNITLNSDNSLHHSISESEDLSSASTLSDY 519
Query: 299 YIVSWLIAKLLIYHSCLKYIVSLFGSES 382
+ + K L Y L + +S +E+
Sbjct: 520 FRFVLRVGKSLYYAGELSFDISKLKAET 547
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 698 VGDCVYFIDKGTVAIYS 748
+GDC F DKGTVA S
Sbjct: 197 LGDCQVFPDKGTVAFAS 213
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 698 VGDCVYFIDKGTVAIYS 748
+GDC F DKGTVA S
Sbjct: 197 LGDCQVFPDKGTVAFAS 213
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -3
Query: 705 SPTEFILKIISPAINITTCNLKPICTNKGLGNCFRNSTSLTNCRPVCIIMSSRS*PETQS 526
SP FILK SP++ I + + P L +C + S + P+C + S++ P S
Sbjct: 225 SPAAFILKSGSPSLQIHSVEI-PWVEPLALADCIQKSGN-----PICFLDSAKK-PGRYS 277
Query: 525 II 520
I+
Sbjct: 278 IL 279
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 485 IRFQSNFLMESRMIDCVSGQLREDIIMHTGRQLVREVEFLKQL 613
+ QSN + + + C+S LRE + H G +E L+ L
Sbjct: 197 LSIQSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENL 239
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 142 KSKELFV-DDRGEPVECNIRNTLYFRTEQSCWYAENKF*FAH 264
K +ELFV +D+G+ +E T + ++ W F F+H
Sbjct: 58 KQEELFVVEDQGDKIETEETGTCAQQLKKRGWNIAGHFMFSH 99
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 736 HCTLVDEINTIANRVYLENNISSDKYHDMQLKTYLHQ 626
HC + + +ANRVY ++ S H + LK L +
Sbjct: 613 HCKMAEICWNLANRVYSKSGWESLSEHMLDLKPTLSE 649
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,157
Number of Sequences: 5004
Number of extensions: 66471
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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