Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d03
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415     38   0.007
07_03_1537 + 27562097-27562340,27562436-27562494,27562605-275626...    31   0.77 
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224...    31   1.3  
01_06_0933 - 33161687-33162205,33162290-33162376,33162459-331626...    30   2.3  
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692...    28   9.5  
04_04_0340 + 24517562-24520318                                         28   9.5  
02_01_0020 - 127572-127637,127760-127819,127903-128004,128099-12...    28   9.5  

>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
          Length = 1490

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +2

Query: 152 NCSWMTVGNLWNATSEIRFTFALNRAVGMLRTNS--NLHIIEQIDLCSQSFY 301
           N S M   ++WN +S   F+ + N+  GM+ TN+   LH++E ID+ +  FY
Sbjct: 247 NLSGMIPNSIWNLSSLRAFSVSENKLGGMIPTNAFKTLHLLEVIDMGTNRFY 298


>07_03_1537 +
           27562097-27562340,27562436-27562494,27562605-27562680,
           27562776-27562847,27562934-27563021,27563118-27563361,
           27563490-27563605,27563783-27564000,27564113-27564144,
           27564262-27564364,27564471-27564751
          Length = 510

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 210 VKRISDVAFHRFPTVIHEQFLGFVGPNVPSIRYSFAN*KYMFHVKNDHIK 61
           +K  +++  +  P  +HEQ+LG++ PN+      +A+  + F    D +K
Sbjct: 152 IKPYANLYHYDLPLALHEQYLGWLSPNIVEAFADYAD--FCFQTFGDRVK 199


>02_02_0453 +
           10420585-10421661,10422015-10422146,10422232-10422456,
           10422555-10422680,10422777-10422839,10423214-10423296,
           10424078-10424309,10424421-10424489,10424532-10424731,
           10424819-10424894,10425015-10425081,10425194-10425471,
           10425600-10425787,10426235-10426391,10426496-10426741
          Length = 1072

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 668 AGDIIFKINSVGDCVYFIDKG---TVAIYSESGKEV 766
           AGDI+ +    G+C Y +  G    +AI  E GKEV
Sbjct: 513 AGDIVVQQGGEGECFYVVGSGEFEVLAIQEEDGKEV 548


>01_06_0933 -
           33161687-33162205,33162290-33162376,33162459-33162695,
           33162778-33162886,33162997-33163313,33163398-33163607,
           33165380-33165901
          Length = 666

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +2

Query: 512 ESRMIDCVSGQLREDIIMHTGRQLVREVEFLKQLPRPLLVQIGFKLHVVIFIAGDIIFKI 691
           E R++  +   LR DI  H    LVR+V   + +   +L  I  ++  ++F  G+II + 
Sbjct: 439 ECRIVRDLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFPKGEIIVRE 498

Query: 692 NSVGDCVYFIDKG 730
                 + FI +G
Sbjct: 499 GDPVQRMLFIVRG 511


>05_05_0385 +
           24566916-24567503,24568609-24568824,24568916-24569241,
           24569906-24570338,24570769-24571281
          Length = 691

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 545 LREDIIMHTGRQLVREVEFLKQLPRPLLVQIGFKLHVVIFIAGDIIFKINSVGDCVYFID 724
           LR DI  H    LVR+V     +   +L  I  ++  +IF  G+II +       + FI 
Sbjct: 477 LRRDIKYHLCLDLVRQVPLFHHMDDLVLENICDRVKSLIFPKGEIIVREGDPVQRMLFIV 536

Query: 725 KG 730
           +G
Sbjct: 537 RG 538


>04_04_0340 + 24517562-24520318
          Length = 918

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 240 SIPTALFSAKVKRISDVAFHRFPTVIHEQFLGFVGPNVP 124
           SI   +F   V RIS++A H F TV   +  G  GP VP
Sbjct: 6   SIEKDVFEPLVMRISEIAQHYFGTVGSSE-TGEKGPTVP 43


>02_01_0020 -
           127572-127637,127760-127819,127903-128004,128099-128194,
           128649-128756,128849-128899,129018-130118
          Length = 527

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 632 APTKVWATVLGTRPPSPIVVRCA*LCLREADPKRNLSF 519
           A +  WA +L  RP SP V     L LR A P+R+ +F
Sbjct: 12  AASAAWARLLSLRP-SPPVSSTHHLTLRIASPRRHFAF 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,540,731
Number of Sequences: 37544
Number of extensions: 401043
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)