Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d03
         (773 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)          32   0.45 
SB_44995| Best HMM Match : PAN (HMM E-Value=1.9e-08)                   32   0.45 
SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_11981| Best HMM Match : CH (HMM E-Value=0.00075)                    31   1.4  
SB_50313| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_4309| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-33)                  28   9.6  

>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 2/222 (0%)
 Frame = +2

Query: 83   WNIYFQFANEYLIEGTFGPTNPRNCSWMTVGNLWNATSEIRFTFALNRAVG-MLRTNSNL 259
            WN   QF   YL +  F  T     SW+++ NL +     ++ ++L +A+  ML      
Sbjct: 524  WNGCLQFLVPYLQD--FPET-----SWVSIHNLMDNDWWEQYCWSLFKAMSHMLCIGYGR 576

Query: 260  HIIEQI-DLCSQSFYIVSWLIAKLLIYHSCLKYIVSLFGSESASARYYIMTKQVVNYMNQ 436
            +  + I ++   +F +++      +    C+ +I  L   +S    Y    +Q+  YM+ 
Sbjct: 577  YPPQNIAEVWVTTFSMLTGATFYAMFIAYCINFIQQL---DSPGRNYREKIQQIEEYMSY 633

Query: 437  XXXXXXXXXXXXXXYNIRFQSNFLMESRMIDCVSGQLREDIIMHTGRQLVREVEFLKQLP 616
                          Y+ R+Q     E +++  +S  LRE II +  R LV+ V F  +  
Sbjct: 634  RRLPVELRDRMTKYYDHRYQGRMFDEEKILHEISKPLREQIINYNCRDLVQSVPFFTEAE 693

Query: 617  RPLLVQIGFKLHVVIFIAGDIIFKINSVGDCVYFIDKGTVAI 742
               +  I  +L   +++ GDII +   +G  +YF+ +G V++
Sbjct: 694  PDFVSAIITRLSFEVYLEGDIIVREGELGTEMYFLREGVVSV 735


>SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)
          Length = 373

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 578 QLVREVEFLKQLPRPLLVQIGFKLHVVIFIAGDIIFKI-NSVGDCVYFIDKGTVAIYSES 754
           +L++ V  LK+L    L ++   L+   F  G+ + +  N    C+YFI+KG V +  + 
Sbjct: 240 ELLKSVSILKELKPDELDKVSDALYPKEFKDGEAVIREGNESAYCMYFIEKGKVRVTVKD 299

Query: 755 GK 760
           G+
Sbjct: 300 GE 301


>SB_44995| Best HMM Match : PAN (HMM E-Value=1.9e-08)
          Length = 107

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 283 EVNLFNNVQIRICSQHTNSSVQCESKAYF 197
           +V  F+N+ +  C QH  +S+QC+S  YF
Sbjct: 44  DVISFSNMDLNSCWQHCRASIQCQSLNYF 72


>SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +2

Query: 512 ESRMIDCVSGQLREDIIMHTGRQLVREVEFLKQLPRPLLVQIGFKLHVVIFIAGDIIFKI 691
           E  +   ++   + +I +H     +  VE         L ++  KL  VI   GD I + 
Sbjct: 495 EQELFHKLNDNFKAEIAIHVNLDTLIRVEMFHDCDPGFLHELVLKLRPVICSPGDFICRQ 554

Query: 692 NSVGDCVYFIDKGTVAIYSE 751
              G  +Y ++KG++ +  E
Sbjct: 555 GEKGREMYIVNKGSLEVLDE 574


>SB_11981| Best HMM Match : CH (HMM E-Value=0.00075)
          Length = 823

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -1

Query: 539 PKRNLSFVIPSESLIEIEYCRT 474
           PK N  F++PSESL +IE  RT
Sbjct: 600 PKLNFDFLVPSESLFDIESPRT 621


>SB_50313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/74 (22%), Positives = 34/74 (45%)
 Frame = +2

Query: 545 LREDIIMHTGRQLVREVEFLKQLPRPLLVQIGFKLHVVIFIAGDIIFKINSVGDCVYFID 724
           L+ D+ +H  R +        +L    +  +  K ++  ++ G  I K       +YF+ 
Sbjct: 9   LQSDVCVHIHRAVFGSHHVFHKLGEGCVRALSVKFNIKNYLPGHYIIKEGDEVKYLYFVV 68

Query: 725 KGTVAIYSESGKEV 766
           +GTV +  +SGK +
Sbjct: 69  EGTVDVI-KSGKSL 81


>SB_4309| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-33)
          Length = 309

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 267 IMCKLEFVLSIPTALFSAKVKRISDVAFHRFPTVIH 160
           I CK+ ++ ++P    SA    ++ +A  R+  VIH
Sbjct: 79  IFCKIFYIGNLPVTTTSASTLTLAILAIERYQAVIH 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,312,099
Number of Sequences: 59808
Number of extensions: 495178
Number of successful extensions: 1147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)