Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3d03
(773 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19157-1|CAB63418.2| 733|Caenorhabditis elegans Hypothetical pr... 46 4e-05
D86922-1|BAA13180.1| 733|Caenorhabditis elegans cyclic nucleoti... 46 4e-05
Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical pr... 41 9e-04
Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical pr... 41 9e-04
U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic nucleoti... 41 9e-04
U39652-8|AAK82909.1| 334|Caenorhabditis elegans Protein kinase ... 29 2.8
U39652-7|AAA80405.2| 366|Caenorhabditis elegans Protein kinase ... 29 2.8
U39652-6|ABI18144.1| 376|Caenorhabditis elegans Protein kinase ... 29 2.8
J05220-1|AAA27980.1| 376|Caenorhabditis elegans protein ( C.ele... 29 2.8
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z81542-10|CAB04419.4| 411|Caenorhabditis elegans Hypothetical p... 28 8.5
>Z19157-1|CAB63418.2| 733|Caenorhabditis elegans Hypothetical
protein ZC84.2 protein.
Length = 733
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/87 (24%), Positives = 45/87 (51%)
Frame = +2
Query: 506 LMESRMIDCVSGQLREDIIMHTGRQLVREVEFLKQLPRPLLVQIGFKLHVVIFIAGDIIF 685
L + +++ + +L+ +I M + +R+V + LL ++ KL + +F GD I
Sbjct: 462 LSDQQVLKVLPDKLQAEIAMQVHFETLRKVRIFQDCEAGLLAELVLKLQLQVFSPGDFIC 521
Query: 686 KINSVGDCVYFIDKGTVAIYSESGKEV 766
K +G +Y + +G + + + GK+V
Sbjct: 522 KKGDIGREMYIVKRGRLQVVDDDGKKV 548
>D86922-1|BAA13180.1| 733|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 733
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/87 (24%), Positives = 45/87 (51%)
Frame = +2
Query: 506 LMESRMIDCVSGQLREDIIMHTGRQLVREVEFLKQLPRPLLVQIGFKLHVVIFIAGDIIF 685
L + +++ + +L+ +I M + +R+V + LL ++ KL + +F GD I
Sbjct: 462 LSDQQVLKVLPDKLQAEIAMQVHFETLRKVRIFQDCEAGLLAELVLKLQLQVFSPGDFIC 521
Query: 686 KINSVGDCVYFIDKGTVAIYSESGKEV 766
K +G +Y + +G + + + GK+V
Sbjct: 522 KKGDIGREMYIVKRGRLQVVDDDGKKV 548
>Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +2
Query: 494 QSNFLMESRMIDCVSGQLREDIIMHTGRQLVREVEFLKQLPRPLLVQIGFKLHVVIFIAG 673
Q L E ++I+ + +L+ D+ + + +V+ + R LL + KL VIF+ G
Sbjct: 503 QQKTLDEKKLIEKLPLKLQTDLALSVHYTTLSKVQLFQDCDRALLRDLVLKLRPVIFLPG 562
Query: 674 DIIFKINSVGDCVYFIDKGTVAI 742
D+I VG +Y I++G + +
Sbjct: 563 DMICLKGDVGKEMYIINQGILQV 585
>Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +2
Query: 494 QSNFLMESRMIDCVSGQLREDIIMHTGRQLVREVEFLKQLPRPLLVQIGFKLHVVIFIAG 673
Q L E ++I+ + +L+ D+ + + +V+ + R LL + KL VIF+ G
Sbjct: 503 QQKTLDEKKLIEKLPLKLQTDLALSVHYTTLSKVQLFQDCDRALLRDLVLKLRPVIFLPG 562
Query: 674 DIIFKINSVGDCVYFIDKGTVAI 742
D+I VG +Y I++G + +
Sbjct: 563 DMICLKGDVGKEMYIINQGILQV 585
>U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 800
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +2
Query: 494 QSNFLMESRMIDCVSGQLREDIIMHTGRQLVREVEFLKQLPRPLLVQIGFKLHVVIFIAG 673
Q L E ++I+ + +L+ D+ + + +V+ + R LL + KL VIF+ G
Sbjct: 503 QQKTLDEKKLIEKLPLKLQTDLALSVHYTTLSKVQLFQDCDRALLRDLVLKLRPVIFLPG 562
Query: 674 DIIFKINSVGDCVYFIDKGTVAI 742
D+I VG +Y I++G + +
Sbjct: 563 DMICLKGDVGKEMYIINQGILQV 585
>U39652-8|AAK82909.1| 334|Caenorhabditis elegans Protein kinase
protein 2, isoform b protein.
Length = 334
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 668 AGDIIFKINSVGDCVYFIDKGTVAIY 745
AG+ I + GD Y IDKGTV +Y
Sbjct: 113 AGETIIEQGEEGDNFYVIDKGTVDVY 138
>U39652-7|AAA80405.2| 366|Caenorhabditis elegans Protein kinase
protein 2, isoform a protein.
Length = 366
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 668 AGDIIFKINSVGDCVYFIDKGTVAIY 745
AG+ I + GD Y IDKGTV +Y
Sbjct: 145 AGETIIEQGEEGDNFYVIDKGTVDVY 170
>U39652-6|ABI18144.1| 376|Caenorhabditis elegans Protein kinase
protein 2, isoform c protein.
Length = 376
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 668 AGDIIFKINSVGDCVYFIDKGTVAIY 745
AG+ I + GD Y IDKGTV +Y
Sbjct: 155 AGETIIEQGEEGDNFYVIDKGTVDVY 180
>J05220-1|AAA27980.1| 376|Caenorhabditis elegans protein (
C.elegans cAMP-dependentprotein kinase subunit R mRNA,
complete cds. ).
Length = 376
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 668 AGDIIFKINSVGDCVYFIDKGTVAIY 745
AG+ I + GD Y IDKGTV +Y
Sbjct: 155 AGETIIEQGEEGDNFYVIDKGTVDVY 180
>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical protein
F09C3.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 243 LSIPTALFSAKVKRISDVAFHRFPTVIH 160
L+ P +LF A K+I+D A HR +IH
Sbjct: 983 LTSPRSLFRALGKQITDDATHRLEAIIH 1010
>Z81542-10|CAB04419.4| 411|Caenorhabditis elegans Hypothetical
protein F49A5.7 protein.
Length = 411
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 683 FKINSVGDCVYFIDKGTVA 739
F ++GDCVYFI GT A
Sbjct: 241 FPNKTIGDCVYFIANGTEA 259
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,667,175
Number of Sequences: 27780
Number of extensions: 385536
Number of successful extensions: 1072
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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