Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d03
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    65   8e-13
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    65   8e-13
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 64.9 bits (151), Expect = 8e-13
 Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 1/206 (0%)
 Frame = +2

Query: 146 PRNCSWMTVGNLWNATSEIRFTFALNRAVGMLRTNSNLHIIEQIDLCSQSFYIVSWLIAK 325
           P N SW+ +  L ++    ++++AL +A+  +          Q  L      ++S +I+ 
Sbjct: 307 PSN-SWVAINELQDSFWLEQYSWALFKAMSHMLCIGYGRFPPQ-SLTDMWLTMLS-MISG 363

Query: 326 LLIYHSCLKYIVSLFGSESASARYYI-MTKQVVNYMNQXXXXXXXXXXXXXXYNIRFQSN 502
              Y   L +  +L  S  +S R Y    KQV  YM                +  R+Q  
Sbjct: 364 ATCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPREMRQRITEYFEHRYQGK 423

Query: 503 FLMESRMIDCVSGQLREDIIMHTGRQLVREVEFLKQLPRPLLVQIGFKLHVVIFIAGDII 682
           F  E  ++  +S +LRED+I +  R LV  V F        +  +  KL   +F  GDII
Sbjct: 424 FFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLRYEVFQPGDII 483

Query: 683 FKINSVGDCVYFIDKGTVAIYSESGK 760
            K  ++G  +YFI +G V I   +G+
Sbjct: 484 IKEGTIGSKMYFIQEGIVDIVMANGE 509


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 64.9 bits (151), Expect = 8e-13
 Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 1/206 (0%)
 Frame = +2

Query: 146 PRNCSWMTVGNLWNATSEIRFTFALNRAVGMLRTNSNLHIIEQIDLCSQSFYIVSWLIAK 325
           P N SW+ +  L ++    ++++AL +A+  +          Q  L      ++S +I+ 
Sbjct: 275 PSN-SWVAINELQDSFWLEQYSWALFKAMSHMLCIGYGRFPPQ-SLTDMWLTMLS-MISG 331

Query: 326 LLIYHSCLKYIVSLFGSESASARYYI-MTKQVVNYMNQXXXXXXXXXXXXXXYNIRFQSN 502
              Y   L +  +L  S  +S R Y    KQV  YM                +  R+Q  
Sbjct: 332 ATCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPREMRQRITEYFEHRYQGK 391

Query: 503 FLMESRMIDCVSGQLREDIIMHTGRQLVREVEFLKQLPRPLLVQIGFKLHVVIFIAGDII 682
           F  E  ++  +S +LRED+I +  R LV  V F        +  +  KL   +F  GDII
Sbjct: 392 FFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLRYEVFQPGDII 451

Query: 683 FKINSVGDCVYFIDKGTVAIYSESGK 760
            K  ++G  +YFI +G V I   +G+
Sbjct: 452 IKEGTIGSKMYFIQEGIVDIVMANGE 477


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 58  NFDVVIFDMEHILSICKRIPDR 123
           NF + +FD++ + + CK+  D+
Sbjct: 381 NFFITMFDLDFLTNACKKKDDK 402


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -2

Query: 706 IANRVYLENNISSDKYHDMQL 644
           ++ R+  + N+S + YH+ Q+
Sbjct: 287 VSTRILRDENLSQNSYHEFQI 307


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 460 KEDN*VLQYSISIKLSDGITNDRLRFGSASRRHNY 564
           K D+  ++YS+ +   +   ++RLRF     R  Y
Sbjct: 72  KIDDVTMEYSVQLTFREQWLDERLRFNDFGGRLKY 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,900
Number of Sequences: 438
Number of extensions: 4760
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)