Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d02
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   0.99 
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   2.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   5.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   5.3  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    24   7.0  

>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 231 VLLK*SLNIREKITMKIACFNCI 299
           V++K +LN  E++T++I C +CI
Sbjct: 570 VIVKPALNPAERMTVRICCHDCI 592


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 206 SIWWTRGKSATSSHCWVAR 150
           SIWW+  + AT  + W++R
Sbjct: 67  SIWWSLSRKATRFYRWLSR 85


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 195 PPY*FL*SKETRVLLK*SLNIREKITMKIACFNC 296
           PP   L   +T V +K  L++ +  T++I  FNC
Sbjct: 701 PPSGLLGPTDTAVFVKPDLSLEKLPTLEINTFNC 734


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 266 LFTNVEALLQKHSRLF 219
           +F NVE++ Q HSRLF
Sbjct: 515 VFGNVESIRQLHSRLF 530


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 5   RIRQISEDKNLFLLDPST*ISVLNHNG 85
           R+R+   DK+L L+  +T IS LN +G
Sbjct: 77  RVRKFLTDKHLMLMTLATGISRLNLSG 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,421,411
Number of Sequences: 5004
Number of extensions: 24965
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)