Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3d02
         (380 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.97 
SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_56381| Best HMM Match : hATC (HMM E-Value=0.14)                     28   2.9  
SB_25550| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)                 27   6.8  
SB_32870| Best HMM Match : DUF6 (HMM E-Value=1.5e-31)                  27   6.8  
SB_20186| Best HMM Match : hATC (HMM E-Value=0.14)                     26   9.0  
SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_30044| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_9632| Best HMM Match : hATC (HMM E-Value=0.16)                      26   9.0  
SB_2063| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.0  

>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 292 LKQAIFIVIFSRMLRLYFKSTLVSFDYRNQYGGQEEKAPHPPIVGLQGWNEYKQ 131
           L+  IF+    R+ R ++   L    Y+N YG    K  H   +    W +YK+
Sbjct: 167 LQLEIFVESAGRLRRCHYNHRLFQQTYQNNYGVMSYKVSHS--LDATTWKDYKE 218


>SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = -1

Query: 296 TIKTSYF---HCYLFTNVEALLQK 234
           T KT+YF   HCY+F   +++LQK
Sbjct: 915 TCKTNYFNHTHCYMFKPTKSVLQK 938


>SB_56381| Best HMM Match : hATC (HMM E-Value=0.14)
          Length = 249

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = -1

Query: 296 TIKTSYF---HCYLFTNVEALLQK 234
           T KT+YF   HCY+F   +++LQK
Sbjct: 209 TCKTNYFNHTHCYMFKPTKSVLQK 232


>SB_25550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 82  WQCTTEDMSEAPKAAVTACIH 144
           WQC+T  +   PK  +  C+H
Sbjct: 7   WQCSTPSLIAPPKFVLARCLH 27


>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
          Length = 1012

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 144 FQPCNPTMGGCGAFSSC 194
           F  CN   GGC AF++C
Sbjct: 649 FPSCNVNSGGCHAFATC 665


>SB_32870| Best HMM Match : DUF6 (HMM E-Value=1.5e-31)
          Length = 320

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 282 LFSLLSFHEC*GFTSKALSSLLITGINMVDKRKKRHILP 166
           +F+ +   E   F   A ++L++ G+ +V +RKK  ILP
Sbjct: 268 VFAWMLLSEPVSFAQLAGAALVLAGVLLVSRRKKLPILP 306


>SB_20186| Best HMM Match : hATC (HMM E-Value=0.14)
          Length = 709

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -1

Query: 296 TIKTSYF---HCYLFTNVEALLQK 234
           T KT+YF   HCY F   +++LQK
Sbjct: 669 TCKTNYFNHTHCYKFKPTKSVLQK 692


>SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 743

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 231 LSSLLITGINMVDKRKKRHILPLLGCKVGMNTSSNRR 121
           L S L+ G + +   K+  ILP++     MNT+ ++R
Sbjct: 155 LCSALVEGFDAIVDIKREDILPIVDSNSKMNTALHKR 191


>SB_30044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -1

Query: 296 TIKTSYF---HCYLFTNVEALLQK 234
           T KT+YF   HCY F   +++LQK
Sbjct: 910 TCKTNYFNHTHCYKFKPTKSVLQK 933


>SB_9632| Best HMM Match : hATC (HMM E-Value=0.16)
          Length = 248

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -1

Query: 296 TIKTSYF---HCYLFTNVEALLQK 234
           T KT+YF   HCY F   +++LQK
Sbjct: 208 TCKTNYFNHTHCYKFKPTKSVLQK 231


>SB_2063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 286 VLIVSFFYYYLVFIELCCWMRFK 354
           VL ++  +YYLV  +LCC+ R K
Sbjct: 33  VLHLNGLWYYLVATKLCCYEREK 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,217,557
Number of Sequences: 59808
Number of extensions: 173298
Number of successful extensions: 468
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)