Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c24
         (646 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B5299 Cluster: PREDICTED: hypothetical protein;...    52   1e-05
UniRef50_UPI0000DB739C Cluster: PREDICTED: similar to dynactin 3...    47   4e-04
UniRef50_UPI0000E46D9B Cluster: PREDICTED: hypothetical protein;...    45   0.001
UniRef50_Q9W1V8 Cluster: CG9893-PA; n=6; Sophophora|Rep: CG9893-...    44   0.004
UniRef50_UPI0000D55FAC Cluster: PREDICTED: similar to CG9893-PA;...    40   0.068

>UniRef50_UPI00015B5299 Cluster: PREDICTED: hypothetical protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
           protein - Nasonia vitripennis
          Length = 190

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 37/180 (20%), Positives = 79/180 (43%), Gaps = 2/180 (1%)
 Frame = +3

Query: 51  VLQSXIEQLEAKL-GLSPXISIDGQQGD-SVTANLLSAAQAINXATAGHEKLHEAMQXAS 224
           +L++ I +LE K+ GL    + +G   + S+  ++  A   I+ A +G EK++  ++   
Sbjct: 8   ILENRINELEKKIYGLEKKPNTEGPMPENSIIESVAHANTLISSALSGREKINTLVKRWP 67

Query: 225 XLNNYXDPNFVENLXXNDLHKQEVLAAEPXIXHHCRCMQQCKQATPVLESEAIQKAAQMQ 404
            L +Y + +F       ++  + +LA EP I  + + + Q K+  PVLES+  +   ++ 
Sbjct: 68  ELESYTESDFEPTDLQTEVKLEYILAVEPEIRENAQRLIQLKELLPVLESDRFKNLPELS 127

Query: 405 PTVXXMHXXXXXXXXXXXXVSHGIQQLAETCGSAANDSSXQLAXVAQXXEKVETKMFPKR 584
             +  +             V+   + +         + S  L  +     ++E K  PK+
Sbjct: 128 EKLHDLSLMYVDLGEKAEQVNSETRSMINRYNDIIMNVSKTLIALETEVSELERKAEPKK 187


>UniRef50_UPI0000DB739C Cluster: PREDICTED: similar to dynactin 3;
           n=1; Apis mellifera|Rep: PREDICTED: similar to dynactin
           3 - Apis mellifera
          Length = 187

 Score = 46.8 bits (106), Expect = 4e-04
 Identities = 35/182 (19%), Positives = 75/182 (41%), Gaps = 1/182 (0%)
 Frame = +3

Query: 45  IAVLQSXIEQLEAKL-GLSPXISIDGQQGDSVTANLLSAAQAINXATAGHEKLHEAMQXA 221
           I +L+  + +LE K+ GL+     +    + V  N+L     ++ A +G EK +  ++  
Sbjct: 4   IELLEDRVIELEKKIYGLAKKKENNDTLENPVIDNILHVNTLVSSAMSGREKANLMIKRL 63

Query: 222 SXLNNYXDPNFVENLXXNDLHKQEVLAAEPXIXHHCRCMQQCKQATPVLESEAIQKAAQM 401
             LN Y DP    +    +   Q +LA    I  +   ++Q ++ TPVLE++ ++   ++
Sbjct: 64  PELNTYLDPIIESSEIPIEAKLQLLLAMASEIKQNHEMLKQVQELTPVLETDRLRNVPEL 123

Query: 402 QPTVXXMHXXXXXXXXXXXXVSHGIQQLAETCGSAANDSSXQLAXVAQXXEKVETKMFPK 581
              +  ++            +++ I ++           S  L  +       E    PK
Sbjct: 124 TNKLNDLNLSYLKLYEDTQGLNNHINEVFSKYNDVITSISKSLITIDAIVTTAEIAAMPK 183

Query: 582 RR 587
           ++
Sbjct: 184 KQ 185


>UniRef50_UPI0000E46D9B Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 188

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
 Frame = +3

Query: 45  IAVLQSXIEQLEAKLGLSPXISIDGQQGDSVTANLLSAAQAINXATAGHEKLHEAMQXAS 224
           + +L+  I  LE+++      + +G QG SV  NL    Q I   T+G  K     +   
Sbjct: 7   LEILEQRIAALESRI--CGEGNSNGIQG-SVIDNLHGVKQKIAGLTSGKSKTQALWKRLE 63

Query: 225 XLNNYXDPNFVENL-XXNDLHKQEVLAAEPXIXHHCRCMQQCKQATPVLESEAIQ 386
            LNNY DP     L   ND     +LA E  +      +++ K+ + VL+SE I+
Sbjct: 64  ELNNYLDPELSSQLTLSNDAKTDIILAEEEQLKAQAVLLEKVKELSSVLDSEHIK 118


>UniRef50_Q9W1V8 Cluster: CG9893-PA; n=6; Sophophora|Rep: CG9893-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 192

 Score = 43.6 bits (98), Expect = 0.004
 Identities = 29/113 (25%), Positives = 49/113 (43%)
 Frame = +3

Query: 39  DPIAVLQSXIEQLEAKLGLSPXISIDGQQGDSVTANLLSAAQAINXATAGHEKLHEAMQX 218
           + + +L+  I+ L   LG       D + G+ V   L SA   +  AT G   L + ++ 
Sbjct: 2   EALDILEKRIDALTRVLGPVQ----DSEVGEGVVDALCSAHAILGEATTGSAALQQCVKR 57

Query: 219 ASXLNNYXDPNFVENLXXNDLHKQEVLAAEPXIXHHCRCMQQCKQATPVLESE 377
           +  L  Y DPNF+E        +  + A  P +      +++ KQ  P L +E
Sbjct: 58  SDELEKYLDPNFLEEHQQVRSKEVYLQAVAPELHTQAEQLERIKQLEPALGAE 110


>UniRef50_UPI0000D55FAC Cluster: PREDICTED: similar to CG9893-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG9893-PA - Tribolium castaneum
          Length = 187

 Score = 39.5 bits (88), Expect = 0.068
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
 Frame = +3

Query: 39  DPIAVLQSXIEQLEAK-LGLSPXISIDGQQGDSVTANLLSAAQAINXATAGHEKLHEAMQ 215
           D + VL+  I  LE + L  +P  + D +  + +T  LL     I+ A +  E +   +Q
Sbjct: 2   DSLDVLEKRIAALELQVLPKNPNFASDDKTQE-ITHLLLLTQTMISSALSCREAITSILQ 60

Query: 216 XASXLNNYXDPNFVENLXXNDLHKQEVLAAEPXIXHHCRCMQQCKQATPVLESEAIQKAA 395
             + +N Y DP+  EN    +  +  +L   P +    + +   +  TP  +S +I K  
Sbjct: 61  HMTTINEYLDPSNGENELEVEAKRHYLLELYPELKDTVKLISTFESLTPYTDSSSIIKVT 120

Query: 396 QM 401
           ++
Sbjct: 121 EL 122


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,280,007
Number of Sequences: 1657284
Number of extensions: 6031486
Number of successful extensions: 11528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11525
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)