Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c24
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0236 - 1775941-1776034,1776185-1776504,1776569-1776786,177...    29   4.2  

>12_01_0236 -
           1775941-1776034,1776185-1776504,1776569-1776786,
           1777315-1777723
          Length = 346

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/81 (27%), Positives = 32/81 (39%)
 Frame = +1

Query: 157 LHKPSIXQRQDTKSFMKLCKXPXS*TTIXIRISLKICXXMIYINKKYLQLNQXSXITVAV 336
           LH P   Q    +    L K P        +++L IC  +   N  +L  NQ   + +  
Sbjct: 54  LHNPINHQAIFVQGKSSLYKSPMQAELAAFKLALFICDFLKIANPLFLSDNQELTLLLQN 113

Query: 337 CSNVNRQHQFWSRRPYKKLLK 399
              +N Q+  WS  P   LLK
Sbjct: 114 TDYIN-QNCHWSLLPLLALLK 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,027,862
Number of Sequences: 37544
Number of extensions: 169535
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)