Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c23
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.5  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    22   6.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   6.0  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 136 CGTRVTRS*EREKALRNFQTKIGKKNY 216
           CG R TRS E ++ LR   T  G+K +
Sbjct: 352 CGKRFTRSDELQRHLR---THTGEKRF 375


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 560 IPVRHISSIGFLPYASER 507
           I ++ +SS+GFL YAS++
Sbjct: 185 IVLQLLSSLGFLLYASKK 202


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = -1

Query: 653 LTLALLNPPMNRATTNIRNVSAKLHSACDAAIPVRHISSI 534
           L ++L+N  +    +  ++++ KL +AC+ +  V  + +I
Sbjct: 184 LLISLINILIRSFKSRYKDLNQKLETACEQSKSVEELMNI 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,028
Number of Sequences: 336
Number of extensions: 4054
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)