Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3c23
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 41 2e-04
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 40 3e-04
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 35 0.011
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 33 0.032
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 32 0.075
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 32 0.099
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 31 0.13
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 30 0.30
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 30 0.40
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.53
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 28 1.6
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 27 2.1
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar... 26 4.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 4.9
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 6.5
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 6.5
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 26 6.5
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 8.6
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 25 8.6
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 454 LGSMYSFLQFLTSPIVGSLSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIGG 633
+GS Y P VG + GRK +L IC+ AL ++ + +V R I G
Sbjct: 136 IGSAYVLASNAVLPAVGVFCNILGRKIVLYICIFFFMLGSALCGASQNMIWLIVCRAIQG 195
Query: 634 LSKAN-VSLCMAIVTDASTEKTRARGMALVGLAF 732
L +SL I++D + +TR ++ A+
Sbjct: 196 LGGGGIISLVNIIISDITPLRTRPMYSGILATAW 229
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 40.3 bits (90), Expect = 3e-04
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Frame = +1
Query: 250 IAFVFLSLLLDLFAFTMILPLLP-SLMDYYSREENQENSLYSTLLQAVRSFQKLTGAPDR 426
I + ++L DLF + +I P+LP SL+D ++ S+ STLL +P
Sbjct: 17 IGTIAIALFTDLFLYGIITPILPFSLVDRVGISPDRVQSVISTLLAVYAVANIAASSPIG 76
Query: 427 FVSVLFGGALGSMYSFLQFLTSPIVGSLSDAYGRKPMLLIC--LTGIAASHALWSLAETF 600
F++ F M L FLTS +L PML++ L G++A+ +W++
Sbjct: 77 FLADKFLTRKVPMLIGLIFLTS--ATALLTFGNSVPMLIVARVLQGLSAA-VVWTVGLAL 133
Query: 601 LIFVV 615
L+ VV
Sbjct: 134 LVDVV 138
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Frame = +1
Query: 415 APDRFVSVLFGGALGSMYSFLQFLTSPIVGSLSDAY-GRKPMLLICLTGIAASHALWSLA 591
+PDR SV+ L ++Y+ S +G L+D + RK +LI L + ++ AL +
Sbjct: 49 SPDRVQSVI--STLLAVYAVANIAASSPIGFLADKFLTRKVPMLIGLIFLTSATALLTFG 106
Query: 592 ETFLIFVVARFIGGLSKANV-SLCMAIVTD 678
+ + +VAR + GLS A V ++ +A++ D
Sbjct: 107 NSVPMLIVARVLQGLSAAVVWTVGLALLVD 136
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 35.1 bits (77), Expect = 0.011
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 451 ALGSMYSFLQFLTSPIVGSLSDAYGRKPMLLICLTGIAASHALWSLAET-------FLIF 609
A GS+ +FL ++ G++ D YGR+ +L I ++ + LW L ++ F++F
Sbjct: 191 AFGSLAAFLGLFSTAYYGTMGDIYGRRLVLFITVSFLLLGD-LWLLYQSYAPKHPYFVLF 249
Query: 610 VVA-RFIGGLSKANVSLCMAIVTDASTEKTRA 702
A + +GG V+ + V D S + RA
Sbjct: 250 AAALKGLGGYISTVVASQNSFVADCSKTEFRA 281
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 33.5 bits (73), Expect = 0.032
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Frame = +1
Query: 454 LGSMYSFLQFLTSPIVGS-LSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIG 630
LG+ + + P++ S LS+ YGR+P+ + T A +L+ +FVV RF
Sbjct: 79 LGATLYVIGVMLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNLAMFVVFRFFS 138
Query: 631 G-LSKANVSLCMAIVTDASTEKTRAR--GMALVGL 726
G + + ++D +++ R + G+ +G+
Sbjct: 139 GFFGSVGLGIGAGSLSDMFSKRDRGKYIGIYFLGI 173
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 32.3 bits (70), Expect = 0.075
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 496 IVGSLSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIGGLSKANVSLCMAI-V 672
I G+L+D +GRKP++ I I + A +V RF+ G SL + + +
Sbjct: 146 IAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPLYL 205
Query: 673 TDASTEKTRAR 705
++ + K R R
Sbjct: 206 SEIAPSKIRGR 216
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 31.9 bits (69), Expect = 0.099
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +1
Query: 493 PIVGSLSDAYGRKPMLL--ICLTGIAASHALWSLAETFLIFVVARFIGGLSKANVSLCMA 666
P+ G D YGRK LL C+ GI L + + V AR I G+ ++ ++
Sbjct: 142 PLFGKFCDIYGRKKTLLAAYCVFGIGC--FLCGTSRSLWQLVAARAIAGIGGGGMNSTVS 199
Query: 667 I-VTDASTEKTRARGMALVGLAFSV 738
I ++D K R ++ + F++
Sbjct: 200 ILMSDIVPLKQRGTYQGIINVFFAI 224
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 31.5 bits (68), Expect = 0.13
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 460 SMYSFLQFLTSPIVGSLSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIGGLS 639
S SF +++ G L+D GRK +LL + + + + VV RFI G
Sbjct: 127 SATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYG 186
Query: 640 KANVSLCMAI-VTDASTEKTRAR 705
SL + + +T+ + + R R
Sbjct: 187 IGLTSLIVPMYITELAPARLRGR 209
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 30.3 bits (65), Expect = 0.30
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 475 LQFLTSPIVGS-LSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIGGLSKANV 651
L + PI + +S+ GRK L I L + + A+ ++ RF GG A V
Sbjct: 185 LGYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMICRFFGGYG-ACV 243
Query: 652 SLCMAIVTDASTEKTRARGMAL 717
LC+ A R RG A+
Sbjct: 244 PLCVVAAAFADMYPNRYRGTAI 265
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 29.9 bits (64), Expect = 0.40
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +1
Query: 481 FLTSPIVGS-LSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIGG-LSKANVS 654
++ PIV + LS+ GRK LLI + G + ++A+ ++ RF G + A ++
Sbjct: 183 YIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTIMMCRFFSGFFASAPLT 242
Query: 655 LCMAIVTDASTEKTRARGMAL 717
+ A D + K R + +
Sbjct: 243 VVAAAFADMYSNKHRGTAITI 263
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 29.5 bits (63), Expect = 0.53
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +1
Query: 367 YSTLLQAVRSFQKLTGAPDRFVSVLFGGALGSMYSFLQFLT-SPIVGSLSDAYGRKPMLL 543
Y ++ VR F K P+ + + + S Y FLQF+T SP+ G+++ + G +L
Sbjct: 359 YGLMMNLVRDFSKNLENPNFYYEREY---VDSFYDFLQFMTSSPLGGNMACSAGLTSLLG 415
Query: 544 ICLTGIAASHALWSLAETFLIFVVARFIGGLSKA 645
L+ + A + +A + I ++ I G S A
Sbjct: 416 YHLS-VKTPQATYVVARS--IVMLDHLIDGYSMA 446
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/72 (20%), Positives = 31/72 (43%)
Frame = +1
Query: 493 PIVGSLSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIGGLSKANVSLCMAIV 672
P+ G LSD +GR+P ++ ++ + +AR + G+ + +I+
Sbjct: 84 PLYGRLSDIFGRRPTVVFANAAFTLGTFWCGISRSLPELCMARALAGIGGGGLGTMSSII 143
Query: 673 TDASTEKTRARG 708
+ + R RG
Sbjct: 144 S-SDIVSLRERG 154
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 623 NRATTNIRNVSAKLHSACDAAIPVRHISSIGFLPYASERLPT 498
N + ++ K S D ++P+R +S++ PY SE LP+
Sbjct: 121 NGSKNGAKSAVKKEESDTDDSVPLRAVSTVSLTPYKSE-LPS 161
>SPAC2F7.05c |||translation initiation factor eIF5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 337 SREENQENSLYSTLLQAVRSFQKLTGAPDRFVSVLFGGALGSMYSFLQFLTSPIVGSLSD 516
S+ E + N + T++ + K G P +V+ FG LG+ + + + IV D
Sbjct: 24 SKIEGKGNGI-KTVIPNMSDIAKALGRPPLYVTKFFGFELGAQTTIIADMDRYIVNGAHD 82
Query: 517 A 519
A
Sbjct: 83 A 83
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 367 YSTLLQAVRSFQKLTGAPDRFVSVLFGGALGSMYSFLQFLTSPIVGSLS 513
+ LLQA +F+K+ + + G G+ F F TS G+LS
Sbjct: 1112 FPELLQAESTFKKIQSVSGYNIDAMVAGVDGAYDEFCDFQTSLKDGALS 1160
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 47 FLQCRVCIHLKIQKPVGTCSI*PWII 124
FL + I + +++PVG SI WII
Sbjct: 519 FLSIPLSIQVDVEEPVGPTSILQWII 544
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 265 LSLLLDLFAFTMILPLLPSLMDYYSREENQENSLYSTLLQAVRSFQKLTGAPD 423
LSL L+ + +++P + + DY REE+ SL+ L S++ P+
Sbjct: 385 LSLALNQYMEDLLVPFI-EVDDYLKREEHSLRSLFRLSLYKYTSYKIRLETPE 436
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +2
Query: 662 WP**PMLQ--LKKLEQEEWPWWV 724
W PMLQ +KK EW WW+
Sbjct: 161 WVKVPMLQDTMKKYPDAEWIWWL 183
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = +1
Query: 289 AFTMILPLLPSLMDYYSREENQEN--SLYSTLLQAVRSFQKLTGAPDRFVSVLFGGALGS 462
AFT++ +L L DY E EN + ++ + + + L P F G +
Sbjct: 592 AFTLLRDILLLLKDYADLSEPWENVANQFTVSFDELENIRVLNSLPSLFADGKLRGKISL 651
Query: 463 MYSFLQFLTSPIVGSLSDAYGRKPMLLICL 552
+ + +++ + + + + M+ C+
Sbjct: 652 VKTLVEYYDTAVFAIMQNPGNDWDMIRACI 681
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 271 LLLDLFAFTMILPLLPSLMDYYSREENQENSL 366
LLLDL++F L LP L YS ++ N L
Sbjct: 603 LLLDLYSFKNALLKLPDLKQDYSITDSYINHL 634
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,470
Number of Sequences: 5004
Number of extensions: 66145
Number of successful extensions: 180
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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