Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c23
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.2  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 211 NYKNEDTRTDAKTIAFVFLSLLLDLFAFTMILPLLPS 321
           NY+N D R + K I   +L   +D F    +  L  S
Sbjct: 202 NYRNSDVREEMKNIMKFWLDKGIDGFRIDAVPHLFES 238


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 296  VNAKRSNNNDKNTNAMXXXXXXXXXXXXXXFPIFVWKFRRAFSLSHDRVTLVPQ 135
            V AK ++ +DK T                  P   WK R A   S DR+  +P+
Sbjct: 1275 VPAKIASFDDKFTATYKEDVKLPCLAVGVPAPEVTWKVRGAVLQSSDRLRQLPE 1328


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 311 SGRIIVNAKRSNNNDKNTN 255
           +G    NA  +NNN+ N N
Sbjct: 230 AGNANTNASNNNNNNNNNN 248



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 329 SIKDGNSGRIIVNAKRSNNNDKNTN 255
           +I  GN+     N   +NNN+ N N
Sbjct: 227 TITAGNANTNASNNNNNNNNNNNNN 251


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = -1

Query: 326  IKDGNSGR----IIVNAKRSNNNDKNTNAM 249
            +KD  +G+    +  + + S NNDK+TNA+
Sbjct: 976  VKDQKNGKPPSVVSRSTQTSANNDKDTNAV 1005


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 315 QQWKNHRK 292
           Q+W+NHRK
Sbjct: 132 QKWRNHRK 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,331
Number of Sequences: 438
Number of extensions: 4919
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)