Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c18
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    82   9e-17
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    29   0.87 
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   2.7  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    26   4.7  
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo...    25   8.1  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   8.1  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   8.1  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 81.8 bits (193), Expect = 9e-17
 Identities = 42/132 (31%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
 Frame = +1

Query: 331 LLEHDEERFSARREK-VYSFIKIPQELEKFMAYGFFQCADSLLFVYTFLPLRFLIAFWSF 507
           LL +D    +  +EK V +F+  P  +EK   +G+F   DS L+++T  P+R LI+F++ 
Sbjct: 136 LLANDTVPANPIKEKHVENFLATPYAIEKTFLFGWFVSVDSFLYIFTLFPIRVLISFFTL 195

Query: 508 CNRLFRNCFGFSSHYSKS---ILKPAETCDVLKGFILLVCSILMCYIDTNMMYHLVKSQS 678
              +F+  F    H + S    L  +   D+LK  ++   SIL+  ID + +YH++++Q+
Sbjct: 196 SRCIFQGLFSTFFHRNSSPNRSLPRSRKIDLLKLLLIFSTSILIRKIDVSRLYHIIRAQA 255

Query: 679 VMKLYIFYNMLE 714
            ++ Y+ YN+LE
Sbjct: 256 SIRFYVLYNVLE 267


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 14/180 (7%)
 Frame = +1

Query: 130 LHIKKMSTTNNE------IYDQPKRLRFKSVTNVQQSSNEITSTAIGKDIRCRDEEKSAS 291
           L + K++   NE      I DQ  R      T   QSS+ + +  +   I  RD+ K   
Sbjct: 122 LPVSKIAEVTNELDTLVRINDQLSRNHISGTTEEMQSSSSLIAGEVQPGISFRDQLKVGK 181

Query: 292 LFAFLHVELTRGYL----LEHDEERFSARREKVYSFIKIPQELEKFMAYGFFQCADSLLF 459
           L   L++  T        L+++ E  S   + +YS     + L   ++Y  F     LL 
Sbjct: 182 LEDTLYLGPTTSEAFIERLQNELELESISEDDLYS-----KRLSPSVSYSEFD-EQLLLH 235

Query: 460 VYTFLPLRFLIAFW--SFCNRLFRNCFGFSSHYSKSILK--PAETCDVLKGFILLVCSIL 627
             + +P + ++ F   SF   +  N F +  H+ K  L+   A    +  GF+ ++  +L
Sbjct: 236 ARSLIPSKAVVEFLINSFFINVQTNLFVYHPHFFKCRLEIFLAMENQIDAGFLCILLMVL 295


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 610 LVCSILMCYIDTNMMYHLVKSQSVMKLYIFY 702
           ++   L C   +N+MY L+KS S      FY
Sbjct: 303 IIVMFLYCLPPSNVMYELIKSNSQQPFVSFY 333


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 457 FVYTFLPLRFLIAFWSFCNRL 519
           +V T LPLR L  +W + NR+
Sbjct: 75  YVLTTLPLRTLSRWWGYVNRI 95


>SPAC2F3.02 |||ER protein translocation subcomplex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 553 NSVKKIQNSF*ITYYRMTKMLLRILEEEMCKQITKN 446
           N+  KI+N++   YYR  K L  +   E  KQ+ ++
Sbjct: 133 NAALKIRNNYGKCYYRKAKALEAMHRIEEAKQVVRD 168


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 442 ADSLLFVYTFLPLRFLIAFWSFCNRLFRNCFGFSSHYSKSILKPAETCD 588
           A ++++V    P RFL A W F   +    F F   Y + +   A  CD
Sbjct: 542 ASNIMYVVGQYP-RFLKAHWKFLKTVVNKLFEFMHEYHEGVQDMA--CD 587


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 454 LFVYTFLPLRFLIAFWSFCNRLFRNCFGFSSHYSK 558
           +F+ +F   RFLIA ++  ++ F + F  +S Y+K
Sbjct: 118 VFINSFNIHRFLIAGFTAASKFFSDVFYTNSRYAK 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,870
Number of Sequences: 5004
Number of extensions: 52702
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)