Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c18
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569...    36   0.024
06_01_0211 + 1604799-1605037,1605420-1605575,1605972-1606043,160...    31   1.2  
08_01_0680 - 5958066-5960253,5960707-5961503                           29   2.8  
01_05_0645 - 23899579-23904483                                         28   8.5  

>03_05_0915 +
           28755584-28756139,28756695-28756846,28756994-28756996,
           28757587-28757690,28758033-28758121,28758682-28758825,
           28759194-28759291,28759380-28759502,28760045-28760113,
           28760206-28760406
          Length = 512

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 364 RREKVYS-FIKIPQELEK-FMAYGFFQCADSLLFVYTFLPLRFLIAFW 501
           +R++VY+    +P   E+  +  GFF C DS L + T +P R  I  W
Sbjct: 219 KRQRVYNTMFHVPWRCERELIVAGFFVCLDSFLSLLTIMPARIAITVW 266


>06_01_0211 +
           1604799-1605037,1605420-1605575,1605972-1606043,
           1606325-1606396,1606608-1606679,1606777-1606848,
           1606936-1607007,1607092-1607160,1607278-1607349,
           1607630-1607701,1607786-1607857,1607940-1608011,
           1608100-1608171,1608286-1608357,1608449-1608520,
           1608633-1608704,1608801-1608872,1608962-1609033,
           1609120-1609191,1609283-1609353,1609439-1609570,
           1609676-1610014,1610097-1610467,1610599-1610928,
           1611115-1611150
          Length = 964

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 535 GFSSHYSKSILKPAETCDVLKGFILLVCSILMCYIDTNMMYHLVK 669
           G S     +I K A  C +L GFI+L+C +L+    TN    LVK
Sbjct: 556 GHSHGQRVNISKTAIACIIL-GFIILLCVLLLAIYKTNQPQPLVK 599


>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 439 CADSLLFVYTFLPLRFLIAFWSFCNRLFRNCFGFSSHYSKSILKPAETCDVLKGFILLVC 618
           C +   F+Y   PL    + W F NR+F +  G  S + +   +  + C  L   I+ + 
Sbjct: 310 CCNHRRFIYRMEPLSDENSRWLFFNRIFGSEDGCPSQFREISAQILKKCSGLPLAIITIA 369

Query: 619 SIL 627
           S+L
Sbjct: 370 SLL 372


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 274 EEKSASLFAFLHVELTRGYLLEHDEERFSARREKVYSFIKIPQELEKFMAY 426
           +E S S F    +EL  G+++  +EE F   +E +   I++P+   K   Y
Sbjct: 113 DEPSISDFDINVIELDVGFVIALEEEEFEIDKELLRREIRLPKNRAKTKRY 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,383,888
Number of Sequences: 37544
Number of extensions: 269794
Number of successful extensions: 548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)