Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c18
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical pr...   134   8e-32
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p...    31   0.82 
U29381-9|AAA68749.2|  503|Caenorhabditis elegans Prion-like-(q/n...    31   0.82 
U29381-4|AAM98023.1|  511|Caenorhabditis elegans Prion-like-(q/n...    31   0.82 
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ...    31   0.82 
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ...    31   0.82 
Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical
           protein F26F2.7 protein.
          Length = 712

 Score =  134 bits (323), Expect = 8e-32
 Identities = 68/140 (48%), Positives = 95/140 (67%)
 Frame = +1

Query: 295 FAFLHVELTRGYLLEHDEERFSARREKVYSFIKIPQELEKFMAYGFFQCADSLLFVYTFL 474
           F+F   ELTRGY L +D  RFS +R KVY+F++IP ELE+F+ YG  QC D+  +++TFL
Sbjct: 144 FSFFWEELTRGYSLHNDHARFSEKRRKVYAFLRIPLELEQFLTYGLLQCIDAFFYLFTFL 203

Query: 475 PLRFLIAFWSFCNRLFRNCFGFSSHYSKSILKPAETCDVLKGFILLVCSILMCYIDTNMM 654
           PLRFL++ +    R+ R    ++S         AETCD LK  I++  S+L+  ID++ +
Sbjct: 204 PLRFLMSIFGALLRIKR----WTS---------AETCDFLKVVIIVAASMLIREIDSSFL 250

Query: 655 YHLVKSQSVMKLYIFYNMLE 714
           YH V+SQ V+KLYIFYNMLE
Sbjct: 251 YHQVRSQGVIKLYIFYNMLE 270


>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 469  FLPLRFLIAFWSFCNRLFRNCFG--FSSHYSKSILKPAETC 585
            FLP   ++  WSFC RL +N  G  ++SH+S      A  C
Sbjct: 1335 FLPHSKMMTVWSFCARLRKNGLGIIYTSHHSGFAEHTATCC 1375


>U29381-9|AAA68749.2|  503|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 35,
           isoform a protein.
          Length = 503

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 580 TCDVLKGFILLVCSILMCYIDTNMMYHLVKSQSVMKL 690
           TC +L  FI   C +L+C   + + YH  + Q+ ++L
Sbjct: 58  TCGLLSWFIGACCLVLLCLAISEVAYHRQRDQAFLRL 94


>U29381-4|AAM98023.1|  511|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 35,
           isoform b protein.
          Length = 511

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 580 TCDVLKGFILLVCSILMCYIDTNMMYHLVKSQSVMKL 690
           TC +L  FI   C +L+C   + + YH  + Q+ ++L
Sbjct: 66  TCGLLSWFIGACCLVLLCLAISEVAYHRQRDQAFLRL 102


>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 469  FLPLRFLIAFWSFCNRLFRNCFG--FSSHYSKSILKPAETC 585
            FLP   ++  WSFC RL +N  G  ++SH+S      A  C
Sbjct: 1335 FLPHSKMMTVWSFCARLRKNGLGIIYTSHHSGFAEHTATCC 1375


>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
            protein C24F3.5 protein.
          Length = 1479

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 469  FLPLRFLIAFWSFCNRLFRNCFG--FSSHYSKSILKPAETC 585
            FLP   ++  WSFC RL +N  G  ++SH+S      A  C
Sbjct: 1335 FLPHSKMMTVWSFCARLRKNGLGIIYTSHHSGFAEHTATCC 1375


>Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical
           protein B0240.2 protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/85 (30%), Positives = 38/85 (44%)
 Frame = +1

Query: 370 EKVYSFIKIPQELEKFMAYGFFQCADSLLFVYTFLPLRFLIAFWSFCNRLFRNCFGFSSH 549
           EK+  F+ I +   + +A    QC + L   YT     F  A++ +C    R  FG    
Sbjct: 229 EKMTKFVDIMRRHYRVIANLSNQCRNMLKTPYTKCLDIFDDAYF-YCKGKAR-FFGSHGD 286

Query: 550 YSKSILKPAETCDVLKGFILLVCSI 624
             + I K A+ C   KGF   VCS+
Sbjct: 287 ACEMIQKTAKICHQAKGFSTEVCSL 311


>U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical
           protein F32E10.3 protein.
          Length = 876

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 136 IKKMSTTNNEIYDQPKRLRFKSVTNVQQSSNEITSTAIGKD 258
           IKK+  TN   +D+PK+   K+   V+++  E ++T   K+
Sbjct: 613 IKKIEKTNKVNHDEPKKEEKKNEEQVKETKLESSTTVAKKE 653


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,709,754
Number of Sequences: 27780
Number of extensions: 288556
Number of successful extensions: 681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)