Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c16
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual    29   0.68 
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   3.6  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   3.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   8.3  

>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 189 DEFNKLRPVIAQADQICYAVLCVFSYFAAGQEQKKAIL 302
           +E  +L+ V+AQ  + C  +  +FS  +  +E+  AIL
Sbjct: 78  EEIERLKQVVAQNAEECLGMAMIFSLCSVAKEETNAIL 115


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   IVRK*NATNLQQKASFHSHFVNIFKSFH 85
           I  K +++ +Q++  FHS F  + KSFH
Sbjct: 584 ISSKPSSSTVQRQTPFHSPFERLHKSFH 611


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 93  PTLKYISFTCTAAFQKNSNFLK-N*LKIKISSNDEFNKLRPVIAQADQICY 242
           P LKYI FTCT        F + + +++KIS     +   P +  +++  Y
Sbjct: 325 PQLKYIRFTCTKCGATLGPFFQDSSVEVKISFCHNCSSRGPFVINSERTVY 375


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = +2

Query: 17   NATNLQQKASFH--SHFVN 67
            NATNL QKA+ H  S FVN
Sbjct: 1727 NATNLLQKAALHKISRFVN 1745


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,225
Number of Sequences: 5004
Number of extensions: 32909
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)