Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c14
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83216-6|CAB62783.1|  534|Caenorhabditis elegans Hypothetical pr...    33   0.12 
Z54271-1|CAA91032.1|  550|Caenorhabditis elegans Hypothetical pr...    33   0.12 
U64837-2|AAB04836.3|  213|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical ...    27   6.2  

>Z83216-6|CAB62783.1|  534|Caenorhabditis elegans Hypothetical
           protein C08F11.8 protein.
          Length = 534

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
 Frame = +3

Query: 276 FGIMSPTGVINLEAYRKRVQLPEQ------LAQRNSINDFGSACLESAEATQH-KQDVCK 434
           F  + P G I+++  +K ++LPE+      L ++N +  FGS    SA+  +H KQ+V K
Sbjct: 270 FDKIIPIGGISVKTQKKSLELPEKWNKILGLRKKNILVSFGSNA-RSADMPEHFKQNVLK 328

Query: 435 KAKVFNECTHLYK 473
            A+   + T ++K
Sbjct: 329 VAESMPDVTFIWK 341


>Z54271-1|CAA91032.1|  550|Caenorhabditis elegans Hypothetical
           protein F21D5.1 protein.
          Length = 550

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 86  NEKSCGITSHCLGHRSSNFSDVRSR*IE*YDSRSMPQRDVS*IETIGNRGVGRALHNILC 265
           +E   GI     GH +  FS++  R I    + S+P R ++    + N  VG A  ++L 
Sbjct: 381 SEFDIGIYFEANGHGTVVFSEIFDRIIRRTPTESLPLRRLALFSRVINETVGDAFADLLA 440

Query: 266 TEEV-RHY 286
            E V RHY
Sbjct: 441 VEAVLRHY 448


>U64837-2|AAB04836.3|  213|Caenorhabditis elegans Hypothetical
           protein T27E4.5 protein.
          Length = 213

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
 Frame = +3

Query: 159 DKLSDMIADQCLNEMYPRSKRL-EIEESDEPCIIFCVLKKFGIMSPTGVINLEAYRKRVQ 335
           D L+ +  +Q  + M P +K +  IE+ +E   +    KKFG+  P    NLE+  K+ +
Sbjct: 50  DNLTSVEENQPNSTMSPLAKIIANIEKRNEKVKMTKKFKKFGVPLPMCSSNLESGYKQCR 109

Query: 336 LPEQLAQRNSI--NDFGSACLESAEATQHKQDVCKKAKVFNEC 458
           +    +   S   N     C+E+     H  ++ +K + F  C
Sbjct: 110 MDITCSSGYSCENNSKTRCCMEA----NHSPEIERKTEEFKTC 148


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
            protein Y54E10A.11 protein.
          Length = 1446

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 384  RFRSR*LNSSELIAPAAVRVFYK-LPN 307
            +F SR L  S  + PAA+R+FYK +PN
Sbjct: 1244 KFASRLLFKSMTLLPAAIRLFYKGMPN 1270


>AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical
           protein ZK1055.5 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 355 RGIQLTTSEARVSKALKQRSTNKM--FARKLKSSTNAHTFIKSYLNKDTVSL 504
           +G     S  +V++  +  ST+ +  FA+  K  TNA  F+ SY   +TV L
Sbjct: 219 QGASRILSIGQVARETEDISTSSLTDFAKNFKKFTNAFDFVASYGVIETVGL 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,798,879
Number of Sequences: 27780
Number of extensions: 206279
Number of successful extensions: 530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)