Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c13
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    26   0.29 
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    26   0.38 
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    26   0.38 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.89 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   1.6  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   2.1  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   3.6  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   3.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.3  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 334 FAAELITQVSMKSIIFGFKSSLFKICKCFSTSSN 233
           F   LI+ +S+ S+IF F  +L  +C C  + ++
Sbjct: 232 FEPFLISNISLVSLIFLFNCTLIIMCDCVRSEAS 265


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 192 YVSALYSAAAQKNQLDDVEKHLQILNKELLKPKM 293
           +V  +++  A KN++D   +HLQ++   LL  K+
Sbjct: 351 FVHEIWNKYALKNEVDKRVRHLQLVAIRLLNTKL 384


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 192 YVSALYSAAAQKNQLDDVEKHLQILNKELLKPKM 293
           +V  +++  A KN++D   +HLQ++   LL  K+
Sbjct: 307 FVHEIWNKYALKNEVDKRVRHLQLVAIRLLNTKL 340


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 345 LKQVANEAGMPDTAINFLELV 407
           L+Q    AGMPD +IN  +++
Sbjct: 6   LEQTLENAGMPDESINISDVI 26


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 546 DALKKFVKEGKNIQLTEKVDPSIMGGM 626
           DAL K  KE     LT + DP   GG+
Sbjct: 96  DALPKLFKEWGTTALTFEEDPEPFGGV 122


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -3

Query: 580 FLPSFTNFLRASIRIFLVLSSSGCAVITSHNASFLCATITARNLLIIFLKSFKRPFSATS 401
           F P+ T  L   I++ L  S    ++ T+H+      +  AR  + + L      +SATS
Sbjct: 258 FHPASTQSLSRWIKMVLAESGVDTSIYTAHSTRHAATSAAARKGISLDLIRKTAGWSATS 317


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 754 LSYCFILYH 728
           LSYCF LYH
Sbjct: 284 LSYCFNLYH 292


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 754 LSYCFILYH 728
           LSYCF LYH
Sbjct: 284 LSYCFNLYH 292


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 468 VAHRNEALCEVITAQPLDDSTRKILMD 548
           + H  + +CE +  QP   S+  IL +
Sbjct: 105 ILHDTQPMCESLNTQPPVTSSSNILQN 131


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 468 VAHRNEALCEVITAQPLDDSTRKILMD 548
           + H  + +CE +  QP   S+  IL +
Sbjct: 105 ILHDTQPMCESLNTQPPVTSSSNILQN 131


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 296 NHFWFQKFFIQNLQMFFNVIQLIFL 222
           N FW   +F+  + +FF +I LI L
Sbjct: 230 NTFWSALYFLTIIFLFF-IIPLIIL 253


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 365 FICNLFQHLCLRCRINYTGFDEINHFWFQKFFIQNLQMFFNVIQLIFLC 219
           F  +L   LCL     +  F    ++++  F I  + + F  + +I LC
Sbjct: 189 FNMHLLFLLCLDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLC 237


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 468 VAHRNEALCEVITAQPLDDSTRKILMD 548
           + H  + +CE +  QP   S+  IL +
Sbjct: 105 ILHDTQPMCESLNTQPPVTSSSNILQN 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,377
Number of Sequences: 336
Number of extensions: 4734
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)