Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3c13
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 99 3e-22
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 31 0.14
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 29 0.56
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 28 1.3
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 28 1.7
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 3.0
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|... 27 3.9
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 3.9
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 6.9
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 9.1
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 25 9.1
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 25 9.1
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 9.1
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 99 bits (238), Expect = 3e-22
Identities = 59/197 (29%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Frame = +3
Query: 126 RFMCTVGLAKKPPIPVFGVEGRYVSALYSAAAQKNQLDDVEKHLQILNKELL-KPKMIDF 302
R + T + PP+ ++G++G Y S+LY+AA ++++LD+VEK L L+ L +P+ +
Sbjct: 21 RSLATATASAHPPVQLYGLDGSYASSLYTAAVKESKLDNVEKALNKLSGVLQQRPEFEQY 80
Query: 303 IETCVINSAAKAKMLKQVANEAGMPDTAINFLELVAENGRLKLLRKMINKFLAVMVAHRN 482
I + + K ++ + G NF ++ +N RL LL ++ +F +M A R
Sbjct: 81 ISSPWLTREDKKILVSSLTQMTGNEPLLKNFYNVLLDNHRLYLLTRIQKQFSTLMRAKRG 140
Query: 483 EALCEVITAQPLDDSTRKILMDALKKFVKEGKN-IQLTEKVDPSIMGGMIVGIEDKHIDM 659
E ++ +A PLD L + K K GK + ++ KV PSI+GG+IV I D +D+
Sbjct: 141 EIEVKITSATPLDSKILSRLESRIAKS-KYGKGKLLVSNKVTPSIIGGLIVEIGDNILDV 199
Query: 660 SIARKIQMYTDILKQSV 710
S+ ++ +L + +
Sbjct: 200 SVGSRLNNLNKLLSEPI 216
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 31.5 bits (68), Expect = 0.14
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 168 PVFGVEGRYVS-ALYSAAAQKNQLDDVEKHLQILNKELLKPKMIDFIETCVINSAAKAKM 344
P F E R + +LY+A + + +D+ L L+K + P ++DFI C + S K K+
Sbjct: 126 PAFIHEYRITAYSLYAAVSVGLKTEDIIAVLDRLSKTPIPPSIVDFIRACTV-SYGKVKL 184
Query: 345 L 347
+
Sbjct: 185 V 185
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 29.5 bits (63), Expect = 0.56
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +3
Query: 207 YSAAAQKNQLDDVEKHLQILNKELLKPKMIDFIETCVINSAAKAKMLKQVANEAGMPDTA 386
Y A+K ++ E+ L ++ P ++ +E +++ + Q M D++
Sbjct: 256 YLKKAEKRFEEEKERSKNYLFTKIASP-LLSVVEDELLSKHLDDLLENQSTGFFSMIDSS 314
Query: 387 INF--LELVAEN-GRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLD 521
NF L+LV E+ R++L K + K+LA VAH + + E T+Q L+
Sbjct: 315 -NFEGLQLVYESFSRVELGVKSLKKYLAKYVAHHGKLINET-TSQALE 360
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 474 HRNEALCEVITAQPLDDSTRKILMDALKKFVKEGKNIQLTE 596
HRNEAL E I S +K + L KF + +QLTE
Sbjct: 54 HRNEALSERIRELEAKLSAKKSFDEELVKFHNLEEKLQLTE 94
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 421 RPFSATSSRKFMAVSGIPASFATCFNIFAFAAELITQVSMKSIIF 287
R + T+ +F+ +S + A C IF + +T K+IIF
Sbjct: 138 RLIAVTTKSRFIEISATSTTVADCRKIFEDSQNYLTLTGRKTIIF 182
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 156 KPPIPVFGVEGRYVSALYSAAAQKNQLD---DVEKHLQILNKELLKPKMIDFI 305
KP I + EG+ V +L SAA + Q++ +H+++L L K F+
Sbjct: 1098 KPKIDTWSTEGKKVESLQSAAIEFRQVEFSYPTRRHIKVLRGLNLTVKPGQFV 1150
>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 773 FFFIL*TKLLFYFVPLNTIILNRLFQNISVHLNFSRYTHVYVFIFNSH 630
+ FI LF F LNT +F+NI L +S+ V + I+ H
Sbjct: 69 YAFISLLNPLFTFFILNTNFPIPIFKNIKEDLMYSKKLQVLLLIYEIH 116
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 475 CATITARNLLIIFLKSFKRPFSATSSRKFMAVSGIPAS 362
CA + N+++ + +F RPF R F G P+S
Sbjct: 2304 CAILYTLNIILSKISTFLRPFLPQLQRTFAKCLGDPSS 2341
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 67 FFLFHKLQICLLISCPAFLEDSCVPLDSLKSRQYQYLVLKGGMYQHSIVRLHKKIN 234
FFLF L C+ + CP L S +PL + +K G+ + L KK N
Sbjct: 159 FFLFVTLLQCIPLFCPEHLGLSFIPLSVI----LLTTAIKDGIEDYRRCVLDKKFN 210
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = -3
Query: 418 PFSATSSRKF---MAVSGIPASFATCFNIFAFAAELITQVSMKSIIFG 284
PFS S + + +SG P T +F F EL QV + FG
Sbjct: 146 PFSPVSEKVYDPSFTMSGAPQDSNTSVIVFGFPPELTNQVIAEFSRFG 193
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 563 RKGRQEYTIDRESGSIYYGRHDRGN*R*THRHEYSEKN 676
RK + DRE GR+DR N R +RH E++
Sbjct: 336 RKRSSSRSDDREYHRRSDGRYDRSNYRDDYRHRRKERD 373
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 9.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 396 LELVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDSTRKILMDALKKFV 566
L LV N LL+ M+ KF A N+ + E +S RK++ + KFV
Sbjct: 266 LSLVESNS---LLKNMVAKFEAGKYKVLNKKIAETSLTDECINSYRKLMNECSTKFV 319
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 9.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -3
Query: 676 IFLAILMSMCLSSIPTIMPPIIDGSTFSVNCIFLPSFTNFLRASIRIFLVLSSSGCAVIT 497
IF+ SSI + P IDG+ S+ F P N + R+ V SSS ++ T
Sbjct: 66 IFVPFDKCKLASSISSSPSPKIDGTAASIGMGFPPMSPNLQSSIPRLTNVSSSSNLSMNT 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,314,538
Number of Sequences: 5004
Number of extensions: 75184
Number of successful extensions: 219
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -