Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3c13
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257... 110 1e-24
02_05_0759 + 31545473-31546204 60 2e-09
04_04_0941 - 29544252-29544355,29545155-29545299,29545637-295457... 31 1.3
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 30 2.3
07_01_0677 + 5087584-5087589,5088890-5089172,5093561-5093704,509... 29 3.1
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 29 5.4
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 29 5.4
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 28 9.5
06_01_1006 + 7836366-7836460,7836568-7836626,7836877-7836961,783... 28 9.5
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553... 28 9.5
>06_03_0928 +
26024589-26024645,26024900-26024956,26025464-26025707,
26026126-26026238,26026675-26026761,26026843-26026962
Length = 225
Score = 110 bits (264), Expect = 1e-24
Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 1/184 (0%)
Frame = +3
Query: 156 KPPIPVFGVEGRYVSALYSAAAQKNQLDDVEKHLQ-ILNKELLKPKMIDFIETCVINSAA 332
K P ++G G Y SAL+ AA+ N LD VE ++ ++ P FI+ +
Sbjct: 38 KVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSPLFSQFIKDLSVPKET 97
Query: 333 KAKMLKQVANEAGMPDTAINFLELVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQ 512
+ K + ++ EAG D NFL ++A+NGRLK + ++ +F+ + +AH+ E V T
Sbjct: 98 RVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLTMAHKGEVKVLVRTVI 157
Query: 513 PLDDSTRKILMDALKKFVKEGKNIQLTEKVDPSIMGGMIVGIEDKHIDMSIARKIQMYTD 692
PL + K L + L+ + + K I + +K+D SIMGG+++ K DMSI + +
Sbjct: 158 PLPEKEEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQKVFDMSIKTRAKQMEM 217
Query: 693 ILKQ 704
L+Q
Sbjct: 218 FLRQ 221
>02_05_0759 + 31545473-31546204
Length = 243
Score = 60.1 bits (139), Expect = 2e-09
Identities = 39/184 (21%), Positives = 87/184 (47%), Gaps = 3/184 (1%)
Frame = +3
Query: 147 LAKKPPIPVFGVEGRYVSALYSAAAQKNQLDDVEKHLQILNKELLKPKMIDFIETCVINS 326
LA++ EG Y +AL A++ L+ L+ L K + + +F + +
Sbjct: 50 LARRRAAADAAAEG-YATALSEVASENGTLEATVSDLEKLEKIFAEEAIAEFFDNPTVPR 108
Query: 327 AAKAKMLKQVANEAGMPDTAINFLELVAENGRLKLLRKMINKFLAVMVAHRNEALCEVIT 506
KA+++ ++A + + +NFL +V +NGR L+ +++ +F + + V +
Sbjct: 109 DEKAQLIDEIAKSSELQAHVVNFLNVVVDNGRAGLMTQIVREFENAFNSLTGTEVATVTS 168
Query: 507 AQPLDDSTRKILMDALKKFVKEGKNIQLTEKVDPSIMGGMIV--GIEDKH-IDMSIARKI 677
L+ + ++ + KN+++ ++DP ++ G + G + IDMS+ ++I
Sbjct: 169 VVQLESQDLAQIAQQVQN-LTGAKNVRVKTRIDPELIAGFTIQYGRDGSSLIDMSVRKQI 227
Query: 678 QMYT 689
+ T
Sbjct: 228 EEIT 231
>04_04_0941 -
29544252-29544355,29545155-29545299,29545637-29545775,
29545836-29545893,29546012-29546123,29546311-29546484,
29547276-29547450,29547531-29547589,29548008-29548109,
29548178-29548212,29549017-29549111,29549638-29549686,
29549754-29549812,29549978-29550051,29550204-29550296,
29550389-29550769
Length = 617
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 486 ALCEVITAQPLDDSTRKILMDALKKFVKEGKNIQLTEKVDPSIMGGMIVGIE--DKHIDM 659
AL E+ + DD+ R + +DAL FVK GK+ + + + +I + D +++
Sbjct: 112 ALVELTVSPHSDDAIRDLALDALMDFVKLGKDGRFQSAIYHKFIHNLIHATDSIDPLLEL 171
Query: 660 SIARKIQMYTDI 695
+ K +YTD+
Sbjct: 172 -LGPKYFIYTDV 182
>01_01_0025 +
188915-189132,190625-190705,191350-191506,191958-192161,
192248-192356,192401-192496,192724-193994,194200-194384,
194619-195055,197034-197077,197830-199036,199253-199479
Length = 1411
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 714 IKQTVSEYQCTFEFFSLYSCLCV 646
++Q S+Y T+EFF L C C+
Sbjct: 402 VQQNASQYCSTYEFFHLIMCACI 424
>07_01_0677 +
5087584-5087589,5088890-5089172,5093561-5093704,
5094167-5095269
Length = 511
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -2
Query: 671 SRYTHVYVFIFNSHD----HASHNRWIHFLCQLYILAFLYELFKGIHKDFSG 528
S T V+ FI+ D + H RW+H L + LA + L ++++ +G
Sbjct: 425 SSITVVFCFIWAWRDPVKFNLEHLRWVHMLTVIACLAMIVSLMTSVYQEVAG 476
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 28.7 bits (61), Expect = 5.4
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = +3
Query: 192 YVSALYSAAAQKNQLDDVEKHLQILNKELLKPKMIDFIETCVINSAAKAKMLKQVANEAG 371
+++ + A AQ+N+ ++ LQ L +L K + E + KA+M K + E
Sbjct: 857 FIADVEEAKAQENK--KLQLQLQDLQMQLNDTKELLKRE----KESTKAEMEKTLVPEIC 910
Query: 372 MPDTAINFLELVAENGRLKLL 434
+ T +N EL AEN RLK L
Sbjct: 911 VDTTQVN--ELTAENNRLKAL 929
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.7 bits (61), Expect = 5.4
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Frame = +3
Query: 231 QLDDVEKHLQILNKEL-LKPKMIDFIETCVINSAAKAKMLKQVA-----NEAGMPDTAIN 392
+L + EK++QIL+KEL K + +D ++ +N A+ ++ +VA N +
Sbjct: 1375 ELVNAEKNVQILDKELKQKREEVDSLQAS-LNEEAQKRIEGEVALLAMENLHSQSQEEVR 1433
Query: 393 FLELVAE--NGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLD-DSTRKILMDALKKF 563
L L E +G+L + N+ L M+ +E + V+ Q L + T K L D L+KF
Sbjct: 1434 GLVLKIETLHGKLNEMENS-NRDLKNMICKHSEEI-HVLGEQNLSAELTIKGLHDQLEKF 1491
Query: 564 VKEGKNIQ 587
+ +Q
Sbjct: 1492 TEMNIGLQ 1499
>06_03_0640 -
23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 689 SVHLNFSRYTHVYVFIFNSHDHASHNRWIHFL 594
++ L+ S T+V V IF S + S N W HFL
Sbjct: 657 TIQLSLSSLTNV-VAIFKSGEKTSTNEWRHFL 687
>06_01_1006 +
7836366-7836460,7836568-7836626,7836877-7836961,
7837349-7837496,7837774-7837986,7838403-7838537,
7838659-7838790,7838884-7839099,7839212-7839336,
7839787-7839844,7839977-7840087
Length = 458
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 249 FQRHPIDFFVQPHYRVLIHTALQHQILV 166
FQ PI HYR+L H L+H+ L+
Sbjct: 326 FQTEPIVNMDLDHYRILHHRLLEHEELI 353
>01_07_0095 +
41053562-41053603,41054609-41054846,41055064-41055312,
41055419-41055469,41056044-41056256,41056305-41056367,
41056422-41056474,41056953-41057067,41057150-41057404,
41057531-41058618
Length = 788
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 688 VYI*IFLAILMSMCLSSIPTIMPPIIDGSTFSVNCIFLPSFTNFLRASIRIFL 530
+YI ILM +C++ + G+ + V C+ + T FL A I IF+
Sbjct: 396 IYIPEINWILMVLCVAVTVAFRDITLIGNAYGVACMTVMFVTTFLMALIMIFV 448
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,790,819
Number of Sequences: 37544
Number of extensions: 417491
Number of successful extensions: 1051
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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