Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3c13
(774 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase su... 141 6e-34
U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase su... 140 1e-33
AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical ... 34 0.13
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 30 2.1
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 30 2.1
AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical... 30 2.1
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 30 2.1
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 30 2.1
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 30 2.1
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 30 2.1
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 29 2.8
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 29 2.8
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 29 2.8
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr... 29 4.9
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ... 29 4.9
AC084152-6|AAK39316.1| 286|Caenorhabditis elegans Hypothetical ... 28 6.4
AC024826-12|AAF60792.1| 323|Caenorhabditis elegans Hypothetical... 28 6.4
Z99277-2|CAB16487.1| 557|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z72502-9|CAE17688.1| 300|Caenorhabditis elegans Hypothetical pr... 28 8.5
AF016444-6|AAB65933.1| 330|Caenorhabditis elegans Serpentine re... 28 8.5
>U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform b protein.
Length = 228
Score = 141 bits (341), Expect = 6e-34
Identities = 78/215 (36%), Positives = 124/215 (57%), Gaps = 6/215 (2%)
Frame = +3
Query: 84 ITNLLINIMSCIFRR-FMCTVGLAK----KPPIPVFGVEGRYVSALYSAAAQKNQLDDVE 248
+T L +M+ + +R F + LAK K PI V GVEGRY +ALYSA ++N+LD +
Sbjct: 14 LTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQIS 73
Query: 249 KHLQILNKELLKPKMI-DFIETCVINSAAKAKMLKQVANEAGMPDTAINFLELVAENGRL 425
L + K +F+ + + K ++ ++ + G+ NFL L+AENGRL
Sbjct: 74 TDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRL 133
Query: 426 KLLRKMINKFLAVMVAHRNEALCEVITAQPLDDSTRKILMDALKKFVKEGKNIQLTEKVD 605
L +++ F ++M AHR E +V +A+ L S +K L DAL K K G+ + +T V
Sbjct: 134 NKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVK 193
Query: 606 PSIMGGMIVGIEDKHIDMSIARKIQMYTDILKQSV 710
PSI+GG++V I DK++D+SIA +++ Y D L ++
Sbjct: 194 PSILGGLVVTIGDKYVDLSIASRVKKYKDALATAI 228
>U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform a protein.
Length = 207
Score = 140 bits (338), Expect = 1e-33
Identities = 75/201 (37%), Positives = 116/201 (57%), Gaps = 5/201 (2%)
Frame = +3
Query: 123 RRFMCTVGLAK----KPPIPVFGVEGRYVSALYSAAAQKNQLDDVEKHLQILNKELLKPK 290
R F + LAK K PI V GVEGRY +ALYSA ++N+LD + L + K
Sbjct: 7 RGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQISTDLNNVRSVYKDNK 66
Query: 291 MI-DFIETCVINSAAKAKMLKQVANEAGMPDTAINFLELVAENGRLKLLRKMINKFLAVM 467
+F+ + + K ++ ++ + G+ NFL L+AENGRL L +++ F ++M
Sbjct: 67 KFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLESVVSSFESIM 126
Query: 468 VAHRNEALCEVITAQPLDDSTRKILMDALKKFVKEGKNIQLTEKVDPSIMGGMIVGIEDK 647
AHR E +V +A+ L S +K L DAL K K G+ + +T V PSI+GG++V I DK
Sbjct: 127 RAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVKPSILGGLVVTIGDK 186
Query: 648 HIDMSIARKIQMYTDILKQSV 710
++D+SIA +++ Y D L ++
Sbjct: 187 YVDLSIASRVKKYKDALATAI 207
>AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical
protein Y97E10AR.6 protein.
Length = 446
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = -3
Query: 418 PFSATSSRKFMAVSGIPASFATCFNIFAFA 329
PFSA+ SR F S I A F CF+IF F+
Sbjct: 9 PFSASFSRVFSVFSPISAFFCFCFSIFPFS 38
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -2
Query: 737 FVPLNTIILNRLFQNISVHLNFSRYTHVYVFIFNSHDHASHNRWIH---FLCQLYILAFL 567
F PLN IIL F ++S+ + S Y IF NRW F+ +++L+FL
Sbjct: 76 FQPLNYIILAADFISVSIFMLDSVLRIHYEGIFRCDSSYLSNRWSQFSVFISIIHLLSFL 135
Query: 566 YELFKGIHKDF 534
++ I F
Sbjct: 136 LHCYQLIDNFF 146
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -2
Query: 737 FVPLNTIILNRLFQNISVHLNFSRYTHVYVFIFNSHDHASHNRWIH---FLCQLYILAFL 567
F PLN IIL F ++S+ + S Y IF NRW F+ +++L+FL
Sbjct: 76 FQPLNYIILAADFISVSIFMLDSVLRIHYEGIFRCDSSYLSNRWSQFSVFISIIHLLSFL 135
Query: 566 YELFKGIHKDF 534
++ I F
Sbjct: 136 LHCYQLIDNFF 146
>AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical
protein Y66D12A.15 protein.
Length = 789
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 201 ALYSAAAQKNQLDDVEKHLQILNKELLKPKMIDFIETCVINSAAKAKML 347
+LY+A + Q D+ ++L+ L+K L +I F++ C + S K K++
Sbjct: 122 SLYAAVSVGLQTKDIIEYLERLSKSQLPKGVITFVQMCTV-SYGKVKLV 169
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -2
Query: 737 FVPLNTIILNRLFQNISVHLNFSRYTHVYVFIFNSHDHASHNRWIH---FLCQLYILAFL 567
F PLN IIL F ++S+ + S Y IF NRW F+ +++L+FL
Sbjct: 134 FQPLNYIILAADFISVSIFMLDSVLRIHYEGIFRCDSSYLSNRWSQFSVFISIIHLLSFL 193
Query: 566 YELFKGIHKDF 534
++ I F
Sbjct: 194 LHCYQLIDNFF 204
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -2
Query: 737 FVPLNTIILNRLFQNISVHLNFSRYTHVYVFIFNSHDHASHNRWIH---FLCQLYILAFL 567
F PLN IIL F ++S+ + S Y IF NRW F+ +++L+FL
Sbjct: 134 FQPLNYIILAADFISVSIFMLDSVLRIHYEGIFRCDSSYLSNRWSQFSVFISIIHLLSFL 193
Query: 566 YELFKGIHKDF 534
++ I F
Sbjct: 194 LHCYQLIDNFF 204
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -2
Query: 737 FVPLNTIILNRLFQNISVHLNFSRYTHVYVFIFNSHDHASHNRWIH---FLCQLYILAFL 567
F PLN IIL F ++S+ + S Y IF NRW F+ +++L+FL
Sbjct: 134 FQPLNYIILAADFISVSIFMLDSVLRIHYEGIFRCDSSYLSNRWSQFSVFISIIHLLSFL 193
Query: 566 YELFKGIHKDF 534
++ I F
Sbjct: 194 LHCYQLIDNFF 204
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -2
Query: 737 FVPLNTIILNRLFQNISVHLNFSRYTHVYVFIFNSHDHASHNRWIH---FLCQLYILAFL 567
F PLN IIL F ++S+ + S Y IF NRW F+ +++L+FL
Sbjct: 106 FQPLNYIILAADFISVSIFMLDSVLRIHYEGIFRCDSSYLSNRWSQFSVFISIIHLLSFL 165
Query: 566 YELFKGIHKDF 534
++ I F
Sbjct: 166 LHCYQLIDNFF 176
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 402 LVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDS 527
L A+ + ++L+ +I K ++ HR+ +CE + L+DS
Sbjct: 190 LAAQLNQFEILQMLIRKDASIEKPHRHSCICETCDRERLNDS 231
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 402 LVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDS 527
L A+ + ++L+ +I K ++ HR+ +CE + L+DS
Sbjct: 170 LAAQLNQFEILQMLIRKDASIEKPHRHSCICETCDRERLNDS 211
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 402 LVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDS 527
L A+ + ++L+ +I K ++ HR+ +CE + L+DS
Sbjct: 170 LAAQLNQFEILQMLIRKDASIEKPHRHSCICETCDRERLNDS 211
>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical
protein K08E7.9 protein.
Length = 1321
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 276 VLYSKFANVFQRHPIDFFVQPHYRVLIHTAL 184
V ++ F NVF +P DF Q H+ L+ L
Sbjct: 773 VFFTSFMNVFAGNPADFLSQGHFWALMFLVL 803
>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
protein.
Length = 1321
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 276 VLYSKFANVFQRHPIDFFVQPHYRVLIHTAL 184
V ++ F NVF +P DF Q H+ L+ L
Sbjct: 773 VFFTSFMNVFAGNPADFLSQGHFWALMFLVL 803
>AC084152-6|AAK39316.1| 286|Caenorhabditis elegans Hypothetical
protein Y102A11A.6 protein.
Length = 286
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -2
Query: 572 FLYELFKGIHKDFSGTIIKWLCSYYFT*CLIS-VRYHNSKKLV 447
++ ++ +H+D+SGTI+ SY +T S + YH+S K++
Sbjct: 183 YILKIVPSVHEDYSGTILN---SYQYTFGHKSYITYHHSGKII 222
>AC024826-12|AAF60792.1| 323|Caenorhabditis elegans Hypothetical
protein Y55F3AM.11 protein.
Length = 323
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 195 VSALYSAAAQKNQLDDVEKHLQILNKELLKPKMIDFIETCVI 320
+S A K +DD+ KH + N E+LK + TC+I
Sbjct: 207 ISVATDPATSKYTIDDLAKHFNVSNIEILKIDIEGAELTCLI 248
>Z99277-2|CAB16487.1| 557|Caenorhabditis elegans Hypothetical
protein Y53C12A.3 protein.
Length = 557
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 285 VSKVLYSKFANVFQRHPIDFFVQPHYRVLIHTALQHQI 172
+ + L S F +F H +++F YRV + +HQ+
Sbjct: 294 IKETLPSLFIKIFSEHVLNYFQDIIYRVPMSVISEHQV 331
>Z72502-9|CAE17688.1| 300|Caenorhabditis elegans Hypothetical
protein C08B6.12 protein.
Length = 300
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 714 IKQTVSEYQCTFEFFSLYSCLC 649
I Q E Q F FF+LY C C
Sbjct: 242 ISQQSHELQSAFSFFNLYGCSC 263
>AF016444-6|AAB65933.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 7 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 285 VSKVLYSKFANVFQRHPIDFFVQPHYRVLIHTALQHQILVL 163
V+++ + +FQ H FF+ R+++HT H L+L
Sbjct: 50 VARLFHVNVIIIFQVHWFGFFLHCSNRIVLHTIDLHNYLIL 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,250,841
Number of Sequences: 27780
Number of extensions: 419401
Number of successful extensions: 1323
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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