Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c09
         (793 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q60SY3 Cluster: Putative uncharacterized protein CBG207...    38   0.29 
UniRef50_Q5CKZ9 Cluster: Coronin binding protein; n=2; Cryptospo...    33   6.2  

>UniRef50_Q60SY3 Cluster: Putative uncharacterized protein CBG20702;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG20702 - Caenorhabditis
           briggsae
          Length = 471

 Score = 37.9 bits (84), Expect = 0.29
 Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +1

Query: 319 GPVRARTCVPAKDFSKKTVSYSMC-SKLSKELSASEIFSRIAVTRPHCTLCKKHLCTDAA 495
           GP    TCVP  D   K   +S C S   K     E  + I V R  C  CKK  C D  
Sbjct: 21  GPCYVPTCVPIGDCLGKNQEWSDCGSACPKRCEQKEPMACIEVCREGC-FCKKGFCLDKL 79

Query: 496 HC*TGDVTGLLSRP 537
                D T +L  P
Sbjct: 80  GQCVADKTSILPAP 93


>UniRef50_Q5CKZ9 Cluster: Coronin binding protein; n=2;
           Cryptosporidium|Rep: Coronin binding protein -
           Cryptosporidium hominis
          Length = 369

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 130 PSTKGIKCYNCL-SFDHPGCWDPDH 201
           P   G+ CYN L ++ HP  WDP+H
Sbjct: 261 PCRYGLACYNSLCNYSHPNGWDPNH 285


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,475,761
Number of Sequences: 1657284
Number of extensions: 9614596
Number of successful extensions: 26466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26462
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)