Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c09
         (793 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.5  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 748 NANRRWLGTWLAAVQISFELTEFTILNKSQERAE 647
           N+N  WL    A    SF   EF  L K  +RA+
Sbjct: 262 NSNNIWLHVDAAYAGSSFICPEFRYLMKGIDRAD 295


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 96  FGRHERGHTEEQQCSEQC 43
           +GR ER  +E    SE+C
Sbjct: 800 YGRRERSGSESSSISERC 817


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 371 VFLEKSLAGTHVLARTGPISCPVSTNLADSDVMTI 267
           VFLE    G   +  T  +S P+    A SD+M +
Sbjct: 210 VFLEGERRGKFTVPLTPVVSEPIYDKKAMSDLMIV 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,495
Number of Sequences: 336
Number of extensions: 2333
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)