Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c05
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196           27   8.2  
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842...    27   8.2  
02_01_0722 + 5405550-5405810,5406654-5407399,5407575-5408046,540...    27   8.2  

>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
          Length = 676

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 344 RSRGAPGGGTFRRRFSSNIGLCKTGPARSVAGFIKSSSS 228
           RSRG  GGG  R R  +N      G  R + GF+   SS
Sbjct: 105 RSRGGRGGGRGRGRSLTN----SAGSGRGMGGFVPPGSS 139


>05_04_0210 +
           19082778-19082940,19083806-19083875,19084172-19084295,
           19084442-19084897
          Length = 270

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 338 RGAPGGGTFRRRFSSNIGLCKTGPARSVAGFIKSSSSLDIYDKN 207
           R A G G +RRR   ++   + G     AG +K+     IY++N
Sbjct: 26  RRAEGSGGWRRRRDGHVARARCGAGEPDAGNLKAKCWKIIYNEN 69


>02_01_0722 +
           5405550-5405810,5406654-5407399,5407575-5408046,
           5408129-5408296,5408301-5408418,5408845-5409056,
           5409165-5409287,5409395-5409880,5409976-5410401
          Length = 1003

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 92  NCN*QIFYLPNYYIL 48
           NCN  IFYLP+Y+++
Sbjct: 569 NCNIAIFYLPSYWLI 583


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,434,177
Number of Sequences: 37544
Number of extensions: 137555
Number of successful extensions: 267
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)