Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c05
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical pr...    27   7.4  
CU457741-21|CAM36361.1|  231|Caenorhabditis elegans Hypothetical...    27   7.4  
AL132859-7|CAB60495.2|  231|Caenorhabditis elegans Hypothetical ...    27   7.4  
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z81588-1|CAB04716.1|  281|Caenorhabditis elegans Hypothetical
           protein T07D10.1 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -2

Query: 156 VTGA--HRYHCSTSAPYTPC 103
           VTGA  H + C+  APY PC
Sbjct: 118 VTGARFHEFQCTPPAPYCPC 137


>CU457741-21|CAM36361.1|  231|Caenorhabditis elegans Hypothetical
           protein Y39C12A.9 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 154 NYQIIRIRRNVTQFHIY 204
           +YQ++++R+N T F IY
Sbjct: 9   HYQVLKVRKNATHFEIY 25


>AL132859-7|CAB60495.2|  231|Caenorhabditis elegans Hypothetical
           protein Y39C12A.9 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 154 NYQIIRIRRNVTQFHIY 204
           +YQ++++R+N T F IY
Sbjct: 9   HYQVLKVRKNATHFEIY 25


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 201 DMELGHVSSDTYDLVVTGAHR-YHCSTS 121
           ++E+G   S  YDLVV   H+  HCS S
Sbjct: 69  ELEVGEFRSIFYDLVVRDTHKGCHCSDS 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,483,706
Number of Sequences: 27780
Number of extensions: 127591
Number of successful extensions: 258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)