Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3c02
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.96 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 195 LFAKNLGLSCIKSINKAPIPSGKAMMKVYNR 103
           L ++ L  + ++ I   P P GKA+ K +NR
Sbjct: 684 LGSEALSAATVRFIEAEPQPIGKALSKCHNR 714


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 463 EYIHHCREPHEENVVYTTAQCHQIKQLDRPQQQ 365
           + +HH +  H +       Q  Q +Q  +PQQQ
Sbjct: 812 QQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQ 844



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 537 TTLRLLFATTKSPTTPSILVSFTVSSSA 620
           TTL    AT   P TPS +V+ + +++A
Sbjct: 226 TTLPAASATGTGPATPSAVVATSNATAA 253


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 303 QRRTHSGK-RLENKPCRYSNHHCCCGRS 383
           +R+ + G   L+N    ++NHH   G S
Sbjct: 266 RRKNYGGVYHLDNHHVHHANHHAILGHS 293


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 23  IHGLAYLILPLSFQLEVPW 79
           +  L +LIL L F+L V W
Sbjct: 77  VSDLLFLILGLPFELSVFW 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,555
Number of Sequences: 438
Number of extensions: 4860
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)