Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b21
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899...    28   2.8  
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...    27   6.5  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    27   6.5  

>06_03_0529 -
           21788132-21788395,21788414-21788511,21789458-21789953,
           21790033-21790134,21790218-21790270,21790354-21790414,
           21790491-21790640,21791298-21791350,21794125-21794152
          Length = 434

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 232 TAYXSNSFIEYDXFALRPVHMSCSLYFGMFRVXAVYFDSIF 110
           T   SN+++      L  + M+C+LY+G  R+    F S F
Sbjct: 167 THLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEF 207


>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 232 TAYXSNSFIEYDXFALRPVHMSCSLYFGMFRVXAVYFDSIF 110
           T   SN+++      L  + M+C+LY G  R+    F S F
Sbjct: 152 THLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEF 192



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 232 TAYXSNSFIEYDXFALRPVHMSCSLYFGMFRVXAVYFDSIF 110
           T   SN+++      L  + M+C+LY G  R+    F S F
Sbjct: 713 THLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEF 753


>01_03_0103 - 12567986-12568141,12568307-12568442,12568751-12568824,
            12568932-12569175,12569480-12569766,12570618-12571103,
            12571348-12571459,12571540-12571745,12573071-12573276,
            12573831-12574162,12574284-12574825,12574967-12576308,
            12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 170  HMHRSEGEXVVFDKRITAVCSCLHSVLR 253
            H+ +S+ + + F   ++A+CSC    L+
Sbjct: 1617 HLWKSDSDEISFSSLVSAICSCASDKLK 1644


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,108,104
Number of Sequences: 37544
Number of extensions: 146675
Number of successful extensions: 262
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)