Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3b21
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a prote...    28   2.5  
AC006675-2|AAK84549.1|  333|Caenorhabditis elegans Serpentine re...    28   2.5  
AC199172-5|ABO33273.1|  305|Caenorhabditis elegans F-box a prote...    28   3.3  
AC199172-2|ABO33275.1|  305|Caenorhabditis elegans F-box a prote...    28   3.3  
AL132898-3|CAC14412.1|  346|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF022968-4|AAB69886.2|  458|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    27   7.7  
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    27   7.7  

>AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a protein
           protein 6 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 366 INF-KTTTFRSKTGYTIRSDKRNSIL-RVIDKI*PVEIYTRSTLCKQLHTAVI 214
           INF +   F+     T+ SD    IL +V++K+ PV+  T   +CK L  AV+
Sbjct: 26  INFVRYMNFQDHISPTL-SDMPTEILGQVLEKLKPVDQLTHLKICKSLRAAVV 77


>AC006675-2|AAK84549.1|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein34 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +3

Query: 204 SIKELLXYAVA----YTAYCVCRSLPVIFYLLLGVYYFVCQTVWC 326
           +IK +  +++A    +T YCV    P  F  L  + YF C  V C
Sbjct: 17  TIKRVFAFSIAIIFPFTHYCVLTKSPKSFGFLKWIIYFHCCCVTC 61


>AC199172-5|ABO33273.1|  305|Caenorhabditis elegans F-box a protein
           protein 30 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 291 RVIDKI*PVEIYTRSTLCKQLHTAV 217
           +V++K+ PVEI T   +C+ L TA+
Sbjct: 18  QVLEKLGPVEILTCRKVCRNLRTAI 42


>AC199172-2|ABO33275.1|  305|Caenorhabditis elegans F-box a protein
           protein 32 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 291 RVIDKI*PVEIYTRSTLCKQLHTAV 217
           +V++K+ PVEI T   +C+ L TA+
Sbjct: 18  QVLEKLGPVEILTCRKVCRSLRTAI 42


>AL132898-3|CAC14412.1|  346|Caenorhabditis elegans Hypothetical
           protein Y59A8B.4 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 183 RRANXSYSIKELLXYAVAYTAYCVCRSLPVIFYLL 287
           R     +  K  L Y V +  Y  C +LP++FY L
Sbjct: 126 RNRGSIFKTKGRLLYIVLHYTYAFCFTLPLLFYPL 160


>AF022968-4|AAB69886.2|  458|Caenorhabditis elegans Hypothetical
           protein C10F3.4a protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -3

Query: 333 TGYTIR---SDKRNSILRVIDKI*PVEIYTRSTLCKQLHTAVILLSNTTXSPSDL 178
           T YTIR   S    S++R+I++   ++  T  +LC  L   +I  S  T  P DL
Sbjct: 361 TSYTIRFFESANEQSVIRIIEEEASLDDDTFRSLCFDLADVLIGRSVGTSRPQDL 415


>AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical
           protein C10F3.4b protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -3

Query: 333 TGYTIR---SDKRNSILRVIDKI*PVEIYTRSTLCKQLHTAVILLSNTTXSPSDL 178
           T YTIR   S    S++R+I++   ++  T  +LC  L   +I  S  T  P DL
Sbjct: 385 TSYTIRFFESANEQSVIRIIEEEASLDDDTFRSLCFDLADVLIGRSVGTSRPQDL 439


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
           nucleotide exchange factorfor RAS protein.
          Length = 1413

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 140 SKHAEIQGARHMHRSEGEXVVFDKRITAVCSCLHSVLRV-*ISTGHILSITRSILFRL 310
           S    +   R +  S+    +FD+RI  +C+ +H  L +   +  HI    +SI+F L
Sbjct: 13  SDTVSLTSRRTISTSKHWAAIFDERIYQICNIVHPGLPIDNAAVEHIRYFLQSIVFEL 70


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
           homolog protein 1 protein.
          Length = 1493

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 140 SKHAEIQGARHMHRSEGEXVVFDKRITAVCSCLHSVLRV-*ISTGHILSITRSILFRL 310
           S    +   R +  S+    +FD+RI  +C+ +H  L +   +  HI    +SI+F L
Sbjct: 13  SDTVSLTSRRTISTSKHWAAIFDERIYQICNIVHPGLPIDNAAVEHIRYFLQSIVFEL 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,473,486
Number of Sequences: 27780
Number of extensions: 151735
Number of successful extensions: 352
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)